Strain identifier

BacDive ID: 13055

Type strain: Yes

Species: Pseudomonas veronii

Strain Designation: 92-134

Strain history: CIP <- 1995, D. Izard, Med. Univ., Lille, France: strain 92-134

NCBI tax ID(s): 76761 (species)

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General

@ref: 4301

BacDive-ID: 13055

DSM-Number: 11331

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas veronii 92-134 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from mineral water.

NCBI tax id

  • NCBI tax id: 76761
  • Matching level: species

strain history

@refhistory
4301<- H. Leclerc, Lille; CFML 92-134
404742002, R. Iriye, Shinshu Univ., Nagano, Japan: strain INA06
67770DSM 11331 <-- H. Leclerc CFML 92-134.
123822CIP <- 1995, D. Izard, Med. Univ., Lille, France: strain 92-134

doi: 10.13145/bacdive13055.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas veronii
  • full scientific name: Pseudomonas veronii Elomari et al. 1996

@ref: 4301

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas veronii

full scientific name: Pseudomonas veronii Elomari et al. 1996

strain designation: 92-134

type strain: yes

Morphology

cell morphology

  • @ref: 123822
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 123822
  • production: no
  • name: Pyocyanin

multimedia

  • @ref: 4301
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_11331.jpg
  • caption: Iridescence of DSM 11331 on medium 535 at 28 °C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4301REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
4301REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
40474MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41260MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123822CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4301positivegrowth28mesophilic
40474positivegrowth30mesophilic
41260positivegrowth30mesophilic
55912positivegrowth30mesophilic
67770positivegrowth28mesophilic
123822positivegrowth5-30
123822nogrowth41thermophilic
123822nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55912aerobe
123822obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
12382216947citrate+carbon source
1238224853esculin-hydrolysis
12382217632nitrate+reduction
12382216301nitrite+reduction
12382215882phenol+degradation
12382217632nitrate+respiration

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12382235581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole-
12382215688acetoin-

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
123822oxidase+
123822beta-galactosidase-3.2.1.23
123822alcohol dehydrogenase-1.1.1.1
123822gelatinase-
123822amylase+
123822DNase-
123822caseinase-3.4.21.50
123822catalase+1.11.1.6
123822tween esterase-
123822lecithinase-
123822lysine decarboxylase-4.1.1.18
123822ornithine decarboxylase-4.1.1.17
123822phenylalanine ammonia-lyase-4.3.1.24
123822tryptophan deaminase-
123822urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123822-+++-+--+-+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4301+--+--+-+++++-+++/-++-+
4301+--+----+++++-++-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123822+++++--+-----------+++----+----+++--+---+--++----+++++++++-++-+++---++++++-+++-++++----++++++++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
4301mineral waterContrexeville, Pavillon springFranceFRAEurope
55912Natural mineral waterFranceFRAEurope1992
67770Natural mineral water
123822Environment, Natural mineral water1992

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_168.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_168&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: AF064460
  • Sequence Identity:
  • Total samples: 5463
  • soil counts: 555
  • aquatic counts: 976
  • animal counts: 2173
  • plant counts: 1759

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
43011Risk group (German classification)
1238221Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas veronii gene for 16S rRNA, strain: CIP 104663AB0214111504ena76761
20218Pseudomonas veronii 16S ribosomal RNA gene, complete sequenceAF0644601521ena76761

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas veronii strain DSM 1133176761.12wgspatric76761
66792Pseudomonas veronii LMG 177612642422516draftimg307251
66792Pseudomonas veronii DSM 113312700989495draftimg76761
67770Pseudomonas veronii DSM 11331GCA_001439695contigncbi76761
66792Pseudomonas marginalis LMG 17761GCA_900104875contigncbi298

GC content

  • @ref: 67770
  • GC-content: 61
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.138no
flagellatedyes81.368no
gram-positiveno98.239no
anaerobicno98.444no
halophileno91.895no
spore-formingno95.765no
glucose-utilyes93.923yes
aerobicyes89.585yes
thermophileno99.864yes
glucose-fermentno89.466yes

External links

@ref: 4301

culture collection no.: DSM 11331, CIP 104663, CCUG 43519, LMG 17761, ATCC 700474, ATCC 700272, CFML 92-134, JCM 11942, CCM 7013, CFBP 4304, VTT E-052828

straininfo link

  • @ref: 82265
  • straininfo: 11210

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8863448DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov.Elomari M, Coroler L, Hoste B, Gillis M, Izard D, Leclerc HInt J Syst Bacteriol10.1099/00207713-46-4-11381996Base Composition, DNA, Bacterial/*analysis, Nucleic Acid Hybridization, Pseudomonas/*genetics, *Water Microbiology
Phylogeny12361251Pseudomonas grimontii sp. nov.Baida N, Yazourh A, Singer E, Izard DInt J Syst Evol Microbiol10.1099/00207713-52-5-14972002DNA, Bacterial/genetics, Fresh Water/microbiology, Microscopy, Electron, Molecular Sequence Data, Phylogeny, Pseudomonas/*classification/genetics/isolation & purification/metabolism, Terminology as TopicGenetics
Phylogeny19688380Pseudomonas extremaustralis sp. nov., a Poly(3-hydroxybutyrate) producer isolated from an antarctic environment.Lopez NI, Pettinari MJ, Stackebrandt E, Tribelli PM, Potter M, Steinbuchel A, Mendez BSCurr Microbiol10.1007/s00284-009-9469-92009Antarctic Regions, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Hydroxybutyrates/*metabolism, Molecular Sequence Data, Phylogeny, Polyesters/*metabolism, Pseudomonas/classification/genetics/*isolation & purification/*metabolism, RNA, Ribosomal, 16SMetabolism
Metabolism22112688Pyrimidine biosynthesis in Pseudomonas veronii and its regulation by pyrimidines.West TPMicrobiol Res10.1016/j.micres.2011.10.0022011Aspartate Carbamoyltransferase/genetics/metabolism, Bacterial Proteins/genetics/metabolism, *Gene Expression Regulation, Bacterial, Orotate Phosphoribosyltransferase/genetics/metabolism, Orotidine-5'-Phosphate Decarboxylase/genetics/metabolism, Pseudomonas/enzymology/genetics/*metabolism, Pyrimidines/*biosynthesisEnzymology
Phylogeny28141500Pseudomonas lactis sp. nov. and Pseudomonas paralactis sp. nov., isolated from bovine raw milk.von Neubeck M, Huptas C, Gluck C, Krewinkel M, Stoeckel M, Stressler T, Fischer L, Hinrichs J, Scherer S, Wenning MInt J Syst Evol Microbiol10.1099/ijsem.0.0018362017Animals, Bacterial Typing Techniques, Base Composition, Cattle, DNA, Bacterial/genetics, Fatty Acids/chemistry, Milk/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny31922466Pseudomonas carnis sp. nov., isolated from meat.Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski JInt J Syst Evol Microbiol10.1099/ijsem.0.0039282020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Genes, Bacterial, Germany, Meat/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Poultry, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine, Ubiquinone/chemistryBiotechnology
Phylogeny32375985Pseudomonas fildesensis sp. nov., a psychrotolerant bacterium isolated from Antarctic soil of King George Island, South Shetland Islands.Pavlov MS, Lira F, Martinez JL, Olivares-Pacheco J, Marshall SHInt J Syst Evol Microbiol10.1099/ijsem.0.0041652020Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Islands, Multilocus Sequence Typing, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome
Enzymology35760253NADP(+)-dependent l-arginine dehydrogenase from Pseudomonas velonii: Purification, characterization and application to an l-arginine assay.Ohshima T, Tanaka M, Ohmori TProtein Expr Purif10.1016/j.pep.2022.1061352022Amino Acid Oxidoreductases, *Arginine, Escherichia coli/genetics/metabolism, Kinetics, NADP/metabolism, *NADPH Dehydrogenase/metabolism, Pseudomonas/genetics, Substrate SpecificityMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4301Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11331)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11331
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40474Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5046
41260Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16596
55912Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43519)https://www.ccug.se/strain?id=43519
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82265Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11210.1StrainInfo: A central database for resolving microbial strain identifiers
123822Curators of the CIPCollection of Institut Pasteur (CIP 104663)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104663