Strain identifier

BacDive ID: 130546

Type strain: Yes

Species: Tessaracoccus lapidicaptus

Strain Designation: NR2A-7, IPBSL-7

Strain history: <- F. Puente-Sánchez, Centro de Astrobiologia, CSIC-INTA; IPBSL-7

NCBI tax ID(s): 1427523 (species)

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General

@ref: 21835

BacDive-ID: 130546

DSM-Number: 27266

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Tessaracoccus lapidicaptus NR2A-7 is a mesophilic bacterium that was isolated from Iberian Pyritic Belt deep subsurface.

NCBI tax id

  • NCBI tax id: 1427523
  • Matching level: species

strain history

  • @ref: 21835
  • history: <- F. Puente-Sánchez, Centro de Astrobiologia, CSIC-INTA; IPBSL-7

doi: 10.13145/bacdive130546.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Tessaracoccus
  • species: Tessaracoccus lapidicaptus
  • full scientific name: Tessaracoccus lapidicaptus Puente-Sánchez et al. 2014

@ref: 21835

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Tessaracoccus

species: Tessaracoccus lapidicaptus

full scientific name: Tessaracoccus lapidicaptus Puente-Sánchez et al. 2014

strain designation: NR2A-7, IPBSL-7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21835
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 21835
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate+reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
21835--++-+++--++--+--+/-+/--++-++/-+/-+/---

Isolation, sampling and environmental information

isolation

  • @ref: 21835
  • sample type: Iberian Pyritic Belt deep subsurface
  • geographic location: Río Tinto, Pena de Hierro
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_4015.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_343;97_2461;98_3043;99_4015&stattab=map
  • Last taxonomy: Tessaracoccus lapidicaptus subclade
  • 16S sequence: KF668596
  • Sequence Identity:
  • Total samples: 1744
  • soil counts: 193
  • aquatic counts: 690
  • animal counts: 798
  • plant counts: 63

Safety information

risk assessment

  • @ref: 21835
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21835
  • description: Tessaracoccus lapidicaptus strain IPBSL-7 16S ribosomal RNA gene, partial sequence
  • accession: KF668596
  • length: 1434
  • database: ena
  • NCBI tax ID: 1427523

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tessaracoccus lapidicaptus IPBSL-7GCA_001693815contigncbi1427523
66792Tessaracoccus lapidicaptus IPBSL-72791354959draftimg1427523

GC content

  • @ref: 21835
  • GC-content: 70.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21835

culture collection no.: DSM 27266, CECT 8385

straininfo link

  • @ref: 89067
  • straininfo: 394432

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25052391Tessaracoccus lapidicaptus sp. nov., an actinobacterium isolated from the deep subsurface of the Iberian pyrite belt.Puente-Sanchez F, Sanchez-Roman M, Amils R, Parro VInt J Syst Evol Microbiol10.1099/ijs.0.060038-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Iron, Molecular Sequence Data, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, *Sulfides, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics27688325Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T.Puente-Sanchez F, Pieper DH, Arce-Rodriguez AGenome Announc10.1128/genomeA.01078-162016
Phylogeny28632118Tessaracoccus arenae sp. nov., isolated from sea sand.Thongphrom C, Kim JH, Bora N, Kim WInt J Syst Evol Microbiol10.1099/ijsem.0.0019072017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, *Silicon Dioxide, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21835Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27266Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27266)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89067Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID394432.1