Strain identifier

BacDive ID: 130544

Type strain: Yes

Species: Acidipropionibacterium olivae

Strain Designation: IGBL1

Strain history: <- DSM <- A Maldonado Barragan, Instituto de Grasa-CSIC, IGBL1 <- HL Padros

NCBI tax ID(s): 1243000 (species)

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General

@ref: 21733

BacDive-ID: 130544

DSM-Number: 25436

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, pleomorphic-shaped

description: Acidipropionibacterium olivae IGBL1 is an anaerobe, mesophilic, pleomorphic-shaped bacterium that was isolated from spoiled packaged Spanish-style green olives.

NCBI tax id

  • NCBI tax id: 1243000
  • Matching level: species

strain history

@refhistory
21733<- A. Maldonado Barragán, Instituto de Grasa-CSIC; IGBL1 <- H. L. Padrós
67771<- DSM <- A Maldonado Barragan, Instituto de Grasa-CSIC, IGBL1 <- HL Padros

doi: 10.13145/bacdive130544.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Acidipropionibacterium
  • species: Acidipropionibacterium olivae
  • full scientific name: Acidipropionibacterium olivae (Lucena-Padrós et al. 2014) Scholz and Kilian 2016

  • synonyms

    • @ref: 20215
    • synonym: Propionibacterium olivae

@ref: 21733

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Acidipropionibacterium

species: Acidipropionibacterium olivae

full scientific name: Acidipropionibacterium olivae (Lucena-Padrós et al. 2014) Scholz and Kilian 2016

strain designation: IGBL1

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771pleomorphic-shapedno
67771positive

colony morphology

  • @ref: 21733
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 21733
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
21733positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21733anaerobe
67771anaerobe

spore formation

  • @ref: 67771
  • spore formation: no

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21733spoiled packaged Spanish-style green olivesSevillaSpainESPEurope
67771From spoiled packaged Spanish-style green olivesSevillaSpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Bottled, canned, packed food
#Environmental#Microbial community
#Host Body-Site#Plant#Fruit (Seed)

Safety information

risk assessment

  • @ref: 21733
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21733Propionibacterium olivae strain IGBL1 16S ribosomal RNA gene, partial sequenceJQ2834601378ena1243000
67771Acidipropionibacterium olivae strain DSM _25436T 16S ribosomal RNA gene, partial sequenceMT4841051379ena1243000

GC content

@refGC-contentmethod
2173370.0fluorimetric
6777170.0

External links

@ref: 21733

culture collection no.: DSM 25436, CECT 8061, KCTC 15514

straininfo link

  • @ref: 89065
  • straininfo: 394470

literature

  • topic: Phylogeny
  • Pubmed-ID: 24912823
  • title: Propionibacterium olivae sp. nov. and Propionibacterium damnosum sp. nov., isolated from spoiled packaged Spanish-style green olives.
  • authors: Lucena-Padros H, Gonzalez JM, Caballero-Guerrero B, Ruiz-Barba JL, Maldonado-Barragan A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.063032-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fermentation, *Food Microbiology, Fruit/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Olea/*microbiology, *Phylogeny, Propionibacterium/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, Spain
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21733Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25436Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25436)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
89065Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID394470.1