Strain identifier
BacDive ID: 130543
Type strain:
Species: Myceligenerans cantabricum
Strain Designation: M-201
Strain history: CECT 8512 <-- G. Blanco; Univ. Oviedo, Spain; M-201.
NCBI tax ID(s): 1479025 (species)
General
@ref: 21681
BacDive-ID: 130543
DSM-Number: 28392
keywords: 16S sequence, Bacteria, mesophilic
description: Myceligenerans cantabricum M-201 is a mesophilic bacterium that was isolated from deep-sea scleractinian coral.
NCBI tax id
- NCBI tax id: 1479025
- Matching level: species
strain history
@ref | history |
---|---|
21681 | <- G. Blanco, Universidad de Oviedo, Spain; M-201 |
67770 | CECT 8512 <-- G. Blanco; Univ. Oviedo, Spain; M-201. |
doi: 10.13145/bacdive130543.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Myceligenerans
- species: Myceligenerans cantabricum
- full scientific name: Myceligenerans cantabricum Sarmiento-Vizcaíno et al. 2015
@ref: 21681
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Promicromonosporaceae
genus: Myceligenerans
species: Myceligenerans cantabricum
full scientific name: Myceligenerans cantabricum Sarmiento-Vizcaíno et al. 2015
strain designation: M-201
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21681 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
21681 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21681 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | host species |
---|---|---|---|---|---|---|---|---|
21681 | deep-sea scleractinian coral | Cantabrian Sea, Asturias, Avilés submarine Canyon (43° 38' 58'' N 6° 30' W at 1500 m depth) | Spain | ESP | Europe | 43.6494 | -6.5 | |
67770 | Deep-sea coral (O. Scleractinia, Fam. Caryophillidae) at a depth of 1 | 500 m in the sub-marine Avilés Canyon (Cantabrian Sea), Asturias | Spain | ESP | Europe | O. Scleractinia, Fam. Caryophillidae |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
taxonmaps
- @ref: 69479
- File name: preview.99_36814.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_28;96_17545;97_21606;98_27108;99_36814&stattab=map
- Last taxonomy: Myceligenerans cantabricum subclade
- 16S sequence: HG965210
- Sequence Identity:
- Total samples: 8
- soil counts: 7
- plant counts: 1
Safety information
risk assessment
- @ref: 21681
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21681
- description: Myceligenerans cantabricum partial 16S rRNA gene, isolate M-201
- accession: HG965210
- length: 1404
- database: ena
- NCBI tax ID: 1479025
GC content
- @ref: 21681
- GC-content: 72.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21681
culture collection no.: DSM 28392, CECT 8512, JCM 31705
straininfo link
- @ref: 89064
- straininfo: 400273
literature
- topic: Phylogeny
- Pubmed-ID: 25667397
- title: Myceligenerans cantabricum sp. nov., a barotolerant actinobacterium isolated from a deep cold-water coral.
- authors: Sarmiento-Vizcaino A, Gonzalez V, Brana AF, Molina A, Acuna JL, Garcia LA, Blanco G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000107
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21681 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28392 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28392) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89064 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400273.1 |