Strain identifier

BacDive ID: 130543

Type strain: Yes

Species: Myceligenerans cantabricum

Strain Designation: M-201

Strain history: CECT 8512 <-- G. Blanco; Univ. Oviedo, Spain; M-201.

NCBI tax ID(s): 1479025 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21681

BacDive-ID: 130543

DSM-Number: 28392

keywords: 16S sequence, Bacteria, mesophilic

description: Myceligenerans cantabricum M-201 is a mesophilic bacterium that was isolated from deep-sea scleractinian coral.

NCBI tax id

  • NCBI tax id: 1479025
  • Matching level: species

strain history

@refhistory
21681<- G. Blanco, Universidad de Oviedo, Spain; M-201
67770CECT 8512 <-- G. Blanco; Univ. Oviedo, Spain; M-201.

doi: 10.13145/bacdive130543.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Promicromonosporaceae
  • genus: Myceligenerans
  • species: Myceligenerans cantabricum
  • full scientific name: Myceligenerans cantabricum Sarmiento-Vizcaíno et al. 2015

@ref: 21681

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Promicromonosporaceae

genus: Myceligenerans

species: Myceligenerans cantabricum

full scientific name: Myceligenerans cantabricum Sarmiento-Vizcaíno et al. 2015

strain designation: M-201

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21681GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21681TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21681positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudehost species
21681deep-sea scleractinian coralCantabrian Sea, Asturias, Avilés submarine Canyon (43° 38' 58'' N 6° 30' W at 1500 m depth)SpainESPEurope43.6494-6.5
67770Deep-sea coral (O. Scleractinia, Fam. Caryophillidae) at a depth of 1500 m in the sub-marine Avilés Canyon (Cantabrian Sea), AsturiasSpainESPEuropeO. Scleractinia, Fam. Caryophillidae

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

taxonmaps

  • @ref: 69479
  • File name: preview.99_36814.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_28;96_17545;97_21606;98_27108;99_36814&stattab=map
  • Last taxonomy: Myceligenerans cantabricum subclade
  • 16S sequence: HG965210
  • Sequence Identity:
  • Total samples: 8
  • soil counts: 7
  • plant counts: 1

Safety information

risk assessment

  • @ref: 21681
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21681
  • description: Myceligenerans cantabricum partial 16S rRNA gene, isolate M-201
  • accession: HG965210
  • length: 1404
  • database: ena
  • NCBI tax ID: 1479025

GC content

  • @ref: 21681
  • GC-content: 72.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21681

culture collection no.: DSM 28392, CECT 8512, JCM 31705

straininfo link

  • @ref: 89064
  • straininfo: 400273

literature

  • topic: Phylogeny
  • Pubmed-ID: 25667397
  • title: Myceligenerans cantabricum sp. nov., a barotolerant actinobacterium isolated from a deep cold-water coral.
  • authors: Sarmiento-Vizcaino A, Gonzalez V, Brana AF, Molina A, Acuna JL, Garcia LA, Blanco G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000107
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21681Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28392Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28392)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89064Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400273.1