Strain identifier
BacDive ID: 13054
Type strain:
Species: Pseudomonas balearica
Strain Designation: SP1402
Strain history: <- R.A. Rosselló
NCBI tax ID(s): 74829 (species)
General
@ref: 2442
BacDive-ID: 13054
DSM-Number: 6083
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Pseudomonas balearica SP1402 is a mesophilic bacterium that was isolated from sewage water; enrichment with 2-methylnaphthalene.
NCBI tax id
- NCBI tax id: 74829
- Matching level: species
strain history: <- R.A. Rosselló
doi: 10.13145/bacdive13054.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas balearica
- full scientific name: Pseudomonas balearica Bennasar et al. 1996
synonyms
- @ref: 20215
- synonym: Stutzerimonas balearica
@ref: 2442
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas balearica
full scientific name: Pseudomonas balearica Bennasar et al. 1996
strain designation: SP1402
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 94.427 | |
69480 | 99.754 | negative |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2442 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
38543 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2442 | positive | growth | 30 | mesophilic |
38543 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.403
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 75.662
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2442 | + | - | - | - | - | - | - | - | + | - | - | - | - | + | + | +/- | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 2442
- sample type: sewage water; enrichment with 2-methylnaphthalene
- geographic location: Mallorca, Santa Ponca
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Laboratory | #Lab enrichment |
#Engineered | #Waste | #Wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_1195.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_944;99_1195&stattab=map
- Last taxonomy: Pseudomonas balearica subclade
- 16S sequence: U26418
- Sequence Identity:
- Total samples: 942
- soil counts: 74
- aquatic counts: 344
- animal counts: 506
- plant counts: 18
Safety information
risk assessment
- @ref: 2442
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2442
- description: Pseudomonas stutzeri strain SP1402 16S rRNA gene
- accession: U26418
- length: 1456
- database: ena
- NCBI tax ID: 1123016
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudomonas balearica DSM 6083 DSM6083 (=SP1402) | GCA_000818015 | complete | ncbi | 1123016 |
66792 | Pseudomonas balearica DSM 6083 DSM 6083 | GCA_900103375 | scaffold | ncbi | 1123016 |
66792 | Pseudomonas balearica DSM 6083 | 1123016.11 | wgs | patric | 1123016 |
66792 | Pseudomonas balearica DSM 6083 DSM6083 (=SP1402) | 1123016.6 | complete | patric | 1123016 |
66792 | Pseudomonas balearica DSM 6083 | 2648501814 | complete | img | 1123016 |
66792 | Pseudomonas balearica DSM 6083 | 2602042028 | draft | img | 1123016 |
66792 | Mycobacterium tuberculosis UT0017 UT0017 | GCA_000669295 | scaffold | patric | 1408975 |
66792 | Acinetobacter baumannii 923 | GCA_002019025 | contig | patric | 470 |
GC content
- @ref: 2442
- GC-content: 64.1
External links
@ref: 2442
culture collection no.: DSM 6083, CIP 105297
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/45441 |
20218 | http://www.straininfo.net/strains/154200 |
20218 | http://www.straininfo.net/strains/159692 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8573496 | 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. | Bennasar A, Rossello-Mora R, Lalucat J, Moore ER | Int J Syst Bacteriol | 10.1099/00207713-46-1-200 | 1996 | Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics | Genetics |
Phylogeny | 25525124 | Pseudomonas matsuisoli sp. nov., isolated from a soil sample. | Lin SY, Hameed A, Hung MH, Liu YC, Hsu YH, Young LS, Young CC | Int J Syst Evol Microbiol | 10.1099/ijs.0.000035 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Ubiquinone/chemistry | Genetics |
Genetics | 27103708 | Complete Genome Sequence of Pseudomonas balearica DSM 6083T. | Bennasar-Figueras A, Salva-Serra F, Jaen-Luchoro D, Segui C, Aliaga F, Busquets A, Gomila M, Moore ER, Lalucat J | Genome Announc | 10.1128/genomeA.00217-16 | 2016 | ||
Phylogeny | 28984556 | Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica. | Anwar N, Rozahon M, Zayadan B, Mamtimin H, Abdurahman M, Kurban M, Abdurusul M, Mamtimin T, Abdukerim M, Rahman E | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002295 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, Populus/*microbiology, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 29595413 | Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan. | Kimura N, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Hanada S, Hirose J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002670 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Environmental Pollution, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, Polychlorinated Biphenyls/*metabolism, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Phylogeny | 30950783 | Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia. | Zou Y, He S, Sun Y, Zhang X, Liu Y, Cheng Q | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003390 | 2019 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2442 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6083 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38543 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17301 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |