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Strain identifier

BacDive ID: 13054

Type strain: Yes

Species: Pseudomonas balearica

Strain Designation: SP1402

Strain history: <- R.A. Rosselló

NCBI tax ID(s): 74829 (species)

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General

@ref: 2442

BacDive-ID: 13054

DSM-Number: 6083

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Pseudomonas balearica SP1402 is a mesophilic bacterium that was isolated from sewage water; enrichment with 2-methylnaphthalene.

NCBI tax id

  • NCBI tax id: 74829
  • Matching level: species

strain history: <- R.A. Rosselló

doi: 10.13145/bacdive13054.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas balearica
  • full scientific name: Pseudomonas balearica Bennasar et al. 1996

  • synonyms

    • @ref: 20215
    • synonym: Stutzerimonas balearica

@ref: 2442

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas balearica

full scientific name: Pseudomonas balearica Bennasar et al. 1996

strain designation: SP1402

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.427
6948099.754negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2442CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38543MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
2442positivegrowth30mesophilic
38543positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.403

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 75.662

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2442+-------+----+++/--+--+

Isolation, sampling and environmental information

isolation

  • @ref: 2442
  • sample type: sewage water; enrichment with 2-methylnaphthalene
  • geographic location: Mallorca, Santa Ponca
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_1195.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_944;99_1195&stattab=map
  • Last taxonomy: Pseudomonas balearica subclade
  • 16S sequence: U26418
  • Sequence Identity:
  • Total samples: 942
  • soil counts: 74
  • aquatic counts: 344
  • animal counts: 506
  • plant counts: 18

Safety information

risk assessment

  • @ref: 2442
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2442
  • description: Pseudomonas stutzeri strain SP1402 16S rRNA gene
  • accession: U26418
  • length: 1456
  • database: ena
  • NCBI tax ID: 1123016

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas balearica DSM 6083 DSM6083 (=SP1402)GCA_000818015completencbi1123016
66792Pseudomonas balearica DSM 6083 DSM 6083GCA_900103375scaffoldncbi1123016
66792Pseudomonas balearica DSM 60831123016.11wgspatric1123016
66792Pseudomonas balearica DSM 6083 DSM6083 (=SP1402)1123016.6completepatric1123016
66792Pseudomonas balearica DSM 60832648501814completeimg1123016
66792Pseudomonas balearica DSM 60832602042028draftimg1123016
66792Mycobacterium tuberculosis UT0017 UT0017GCA_000669295scaffoldpatric1408975
66792Acinetobacter baumannii 923GCA_002019025contigpatric470

GC content

  • @ref: 2442
  • GC-content: 64.1

External links

@ref: 2442

culture collection no.: DSM 6083, CIP 105297

straininfo link

@refpassport
20218http://www.straininfo.net/strains/45441
20218http://www.straininfo.net/strains/154200
20218http://www.straininfo.net/strains/159692

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny857349616S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov.Bennasar A, Rossello-Mora R, Lalucat J, Moore ERInt J Syst Bacteriol10.1099/00207713-46-1-2001996Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*geneticsGenetics
Phylogeny25525124Pseudomonas matsuisoli sp. nov., isolated from a soil sample.Lin SY, Hameed A, Hung MH, Liu YC, Hsu YH, Young LS, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.0000352014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Ubiquinone/chemistryGenetics
Genetics27103708Complete Genome Sequence of Pseudomonas balearica DSM 6083T.Bennasar-Figueras A, Salva-Serra F, Jaen-Luchoro D, Segui C, Aliaga F, Busquets A, Gomila M, Moore ER, Lalucat JGenome Announc10.1128/genomeA.00217-162016
Phylogeny28984556Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica.Anwar N, Rozahon M, Zayadan B, Mamtimin H, Abdurahman M, Kurban M, Abdurusul M, Mamtimin T, Abdukerim M, Rahman EInt J Syst Evol Microbiol10.1099/ijsem.0.0022952017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, Populus/*microbiology, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny29595413Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan.Kimura N, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Hanada S, Hirose JInt J Syst Evol Microbiol10.1099/ijsem.0.0026702018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Environmental Pollution, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, Polychlorinated Biphenyls/*metabolism, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome
Phylogeny30950783Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia.Zou Y, He S, Sun Y, Zhang X, Liu Y, Cheng QInt J Syst Evol Microbiol10.1099/ijsem.0.0033902019Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2442Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6083)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6083
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38543Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17301
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)