Strain identifier

BacDive ID: 13054

Type strain: Yes

Species: Pseudomonas balearica

Strain Designation: SP1402

Strain history: CIP <- 1997, DSMZ <- R.A. Rossello: strain SP1402, Pseudomonas stutzeri

NCBI tax ID(s): 74829 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2442

BacDive-ID: 13054

DSM-Number: 6083

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas balearica SP1402 is an obligate aerobe, mesophilic, motile bacterium that was isolated from sewage water; enrichment with 2-methylnaphthalene.

NCBI tax id

  • NCBI tax id: 74829
  • Matching level: species

strain history

@refhistory
2442<- R.A. Rosselló
116714CIP <- 1997, DSMZ <- R.A. Rossello: strain SP1402, Pseudomonas stutzeri

doi: 10.13145/bacdive13054.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas balearica
  • full scientific name: Pseudomonas balearica Bennasar et al. 1996

  • synonyms

    • @ref: 20215
    • synonym: Stutzerimonas balearica

@ref: 2442

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas balearica

full scientific name: Pseudomonas balearica Bennasar et al. 1996

strain designation: SP1402

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.052
69480100negative
116714yesnegativerod-shaped

pigmentation

  • @ref: 116714
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2442CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38543MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116714CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
116714CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2442positivegrowth30mesophilic
38543positivegrowth30mesophilic
116714positivegrowth10-41
116714nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116714
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.989

halophily

  • @ref: 116714
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11671416947citrate-carbon source
1167144853esculin-hydrolysis
11671417632nitrate+reduction
11671416301nitrite+reduction
11671417632nitrate+respiration

antibiotic resistance

  • @ref: 116714
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11671435581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116714oxidase+
116714beta-galactosidase-3.2.1.23
116714alcohol dehydrogenase-1.1.1.1
116714gelatinase-
116714amylase+
116714DNase-
116714caseinase-3.4.21.50
116714catalase+1.11.1.6
116714tween esterase-
116714lecithinase-
116714lipase-
116714lysine decarboxylase-4.1.1.18
116714ornithine decarboxylase-4.1.1.17
116714urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116714---+-++-+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2442+-------+----+++/--+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116714+--------++--------------------+----------------++---+------+--------------+++-++++----+++++++-+++-

Isolation, sampling and environmental information

isolation

  • @ref: 2442
  • sample type: sewage water; enrichment with 2-methylnaphthalene
  • geographic location: Mallorca, Santa Ponca
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_1195.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_944;99_1195&stattab=map
  • Last taxonomy: Pseudomonas balearica subclade
  • 16S sequence: U26418
  • Sequence Identity:
  • Total samples: 942
  • soil counts: 74
  • aquatic counts: 344
  • animal counts: 506
  • plant counts: 18

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
24421Risk group (German classification)
1167141Risk group (French classification)

Sequence information

16S sequences

  • @ref: 2442
  • description: Pseudomonas stutzeri strain SP1402 16S rRNA gene
  • accession: U26418
  • length: 1456
  • database: ena
  • NCBI tax ID: 1123016

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas balearica DSM 6083 DSM6083 (=SP1402)GCA_000818015completencbi1123016
66792Stutzerimonas balearica DSM 6083GCA_900103375scaffoldncbi1123016
66792Pseudomonas balearica DSM 60831123016.11wgspatric1123016
66792Pseudomonas balearica DSM 6083 DSM6083 (=SP1402)1123016.6completepatric1123016
66792Pseudomonas balearica DSM 60832648501814completeimg1123016
66792Pseudomonas balearica DSM 60832602042028draftimg1123016

GC content

  • @ref: 2442
  • GC-content: 64.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.501no
flagellatedyes83.864no
gram-positiveno98.888no
anaerobicno98.072no
aerobicyes88.266no
halophileno79.448no
spore-formingno95.679no
glucose-utilyes81.404no
thermophileno99.612yes
glucose-fermentno90.278yes

External links

@ref: 2442

culture collection no.: DSM 6083, CIP 105297, CCUG 44595

straininfo link

  • @ref: 82264
  • straininfo: 11918

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny857349616S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov.Bennasar A, Rossello-Mora R, Lalucat J, Moore ERInt J Syst Bacteriol10.1099/00207713-46-1-2001996Base Sequence, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, Pseudomonas/*classification/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*geneticsGenetics
Phylogeny25525124Pseudomonas matsuisoli sp. nov., isolated from a soil sample.Lin SY, Hameed A, Hung MH, Liu YC, Hsu YH, Young LS, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.0000352014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Ubiquinone/chemistryGenetics
Genetics27103708Complete Genome Sequence of Pseudomonas balearica DSM 6083T.Bennasar-Figueras A, Salva-Serra F, Jaen-Luchoro D, Segui C, Aliaga F, Busquets A, Gomila M, Moore ER, Lalucat JGenome Announc10.1128/genomeA.00217-162016
Phylogeny28984556Pseudomonas tarimensis sp. nov., an endophytic bacteria isolated from Populus euphratica.Anwar N, Rozahon M, Zayadan B, Mamtimin H, Abdurahman M, Kurban M, Abdurusul M, Mamtimin T, Abdukerim M, Rahman EInt J Syst Evol Microbiol10.1099/ijsem.0.0022952017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, Populus/*microbiology, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny29595413Pseudomonas furukawaii sp. nov., a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil in Japan.Kimura N, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Hanada S, Hirose JInt J Syst Evol Microbiol10.1099/ijsem.0.0026702018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Environmental Pollution, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, Polychlorinated Biphenyls/*metabolism, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome
Phylogeny30950783Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia.Zou Y, He S, Sun Y, Zhang X, Liu Y, Cheng QInt J Syst Evol Microbiol10.1099/ijsem.0.0033902019Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitle
2442Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6083)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6083
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38543Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17301
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82264Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11918.1StrainInfo: A central database for resolving microbial strain identifiers
116714Curators of the CIPCollection of Institut Pasteur (CIP 105297)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105297