Strain identifier
BacDive ID: 130537
Type strain:
Species: Kurthia senegalensis
Strain Designation: JC8E
Strain history: <- V. Roux, Timone Hospital, Marseille, France; JC8E <- J.-C. Lagier
NCBI tax ID(s): 1033740 (species)
General
@ref: 21621
BacDive-ID: 130537
DSM-Number: 24641
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Kurthia senegalensis JC8E is a mesophilic bacterium that was isolated from human stool from a healthy 16-year-old male volunteer living in a rural village.
NCBI tax id
- NCBI tax id: 1033740
- Matching level: species
strain history
- @ref: 21621
- history: <- V. Roux, Timone Hospital, Marseille, France; JC8E <- J.-C. Lagier
doi: 10.13145/bacdive130537.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Kurthia
- species: Kurthia senegalensis
- full scientific name: Kurthia senegalensis Roux et al. 2016
@ref: 21621
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Kurthia
species: Kurthia senegalensis
full scientific name: Kurthia senegalensis Roux et al. 2016
strain designation: JC8E
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21621
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 21621
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
murein
- @ref: 21621
- murein short key: A11.33
- type: A4alpha L-Lys-D-Glu
Isolation, sampling and environmental information
isolation
- @ref: 21621
- sample type: human stool from a healthy 16-year-old male volunteer living in a rural village
- geographic location: Guinean-Sudanian zone, Dielmo
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_62711.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_393;97_443;98_505;99_62711&stattab=map
- Last taxonomy: Kurthia senegalensis
- 16S sequence: JF824796
- Sequence Identity:
- Total samples: 502
- soil counts: 36
- aquatic counts: 40
- animal counts: 394
- plant counts: 32
Safety information
risk assessment
- @ref: 21621
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21621
- description: Kurthia senegalensis 16S ribosomal RNA gene, partial sequence
- accession: JF824796
- length: 1476
- database: ena
- NCBI tax ID: 1033740
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Kurthia senegalensis JC8E | 2548876796 | draft | img | 1033740 |
66792 | Kurthia senegalensis JC8E | GCA_000285595 | scaffold | ncbi | 1033740 |
GC content
- @ref: 21621
- GC-content: 38.21
- method: sequence analysis
External links
@ref: 21621
culture collection no.: DSM 24641, CSUR P138
straininfo link
- @ref: 89059
- straininfo: 399730
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21621 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24641 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24641) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89059 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399730.1 |