Strain identifier

BacDive ID: 130537

Type strain: Yes

Species: Kurthia senegalensis

Strain Designation: JC8E

Strain history: <- V. Roux, Timone Hospital, Marseille, France; JC8E <- J.-C. Lagier

NCBI tax ID(s): 1033740 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21621

BacDive-ID: 130537

DSM-Number: 24641

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Kurthia senegalensis JC8E is a mesophilic bacterium that was isolated from human stool from a healthy 16-year-old male volunteer living in a rural village.

NCBI tax id

  • NCBI tax id: 1033740
  • Matching level: species

strain history

  • @ref: 21621
  • history: <- V. Roux, Timone Hospital, Marseille, France; JC8E <- J.-C. Lagier

doi: 10.13145/bacdive130537.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Kurthia
  • species: Kurthia senegalensis
  • full scientific name: Kurthia senegalensis Roux et al. 2016

@ref: 21621

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Kurthia

species: Kurthia senegalensis

full scientific name: Kurthia senegalensis Roux et al. 2016

strain designation: JC8E

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21621
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 21621
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

murein

  • @ref: 21621
  • murein short key: A11.33
  • type: A4alpha L-Lys-D-Glu

Isolation, sampling and environmental information

isolation

  • @ref: 21621
  • sample type: human stool from a healthy 16-year-old male volunteer living in a rural village
  • geographic location: Guinean-Sudanian zone, Dielmo
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_62711.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_393;97_443;98_505;99_62711&stattab=map
  • Last taxonomy: Kurthia senegalensis
  • 16S sequence: JF824796
  • Sequence Identity:
  • Total samples: 502
  • soil counts: 36
  • aquatic counts: 40
  • animal counts: 394
  • plant counts: 32

Safety information

risk assessment

  • @ref: 21621
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21621
  • description: Kurthia senegalensis 16S ribosomal RNA gene, partial sequence
  • accession: JF824796
  • length: 1476
  • database: ena
  • NCBI tax ID: 1033740

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kurthia senegalensis JC8E2548876796draftimg1033740
66792Kurthia senegalensis JC8EGCA_000285595scaffoldncbi1033740

GC content

  • @ref: 21621
  • GC-content: 38.21
  • method: sequence analysis

External links

@ref: 21621

culture collection no.: DSM 24641, CSUR P138

straininfo link

  • @ref: 89059
  • straininfo: 399730

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21621Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24641Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24641)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89059Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399730.1