Strain identifier

BacDive ID: 130534

Type strain: Yes

Species: Novipirellula rosea

Strain Designation: LHWP3

Strain history: J.-W. Bae LHWP3.

NCBI tax ID(s): 1031540 (species)

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General

@ref: 21761

BacDive-ID: 130534

DSM-Number: 29889

keywords: 16S sequence, Bacteria, mesophilic

description: Novipirellula rosea LHWP3 is a mesophilic bacterium that was isolated from dead ark clam Scapharca broughtonii from an ark clam farm.

NCBI tax id

  • NCBI tax id: 1031540
  • Matching level: species

strain history

@refhistory
21761<- JCM
67770J.-W. Bae LHWP3.

doi: 10.13145/bacdive130534.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/planctomycetota
  • domain: Bacteria
  • phylum: Planctomycetota
  • class: Planctomycetia
  • order: Pirellulales
  • family: Pirellulaceae
  • genus: Novipirellula
  • species: Novipirellula rosea
  • full scientific name: Novipirellula rosea (Roh et al. 2014) Kallscheuer et al. 2021
  • synonyms

    • @ref: 20215
    • synonym: Rhodopirellula rosea

@ref: 21761

domain: Bacteria

phylum: Planctomycetes

class: Planctomycetia

order: Planctomycetales

family: Pirellulaceae

genus: Rhodopirellula

species: Rhodopirellula rosea

full scientific name: Rhodopirellula rosea Roh et al. 2014

strain designation: LHWP3

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21761
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21761positivegrowth28mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
21761dead ark clam Scapharca broughtonii from an ark clam farmScapharca broughtoniiGangjin BayRepublic of KoreaKORAsia
67770Dead ark clam Scapharca broughtonii from an ark clam farm in Gangjin Bay in the south coastal region of KoreaScapharca broughtonii

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Host#Other#Decomposing animal
#Host#Invertebrates (Other)#Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_11489.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_75;96_3304;97_4051;98_5174;99_11489&stattab=map
  • Last taxonomy: Rhodopirellula
  • 16S sequence: JF748734
  • Sequence Identity:
  • Total samples: 750
  • soil counts: 54
  • aquatic counts: 629
  • animal counts: 59
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 21761
  • description: Rhodopirellula rosea strain LHWP3 16S ribosomal RNA gene, partial sequence
  • accession: JF748734
  • length: 1459
  • database: ena
  • NCBI tax ID: 1031540

GC content

  • @ref: 67770
  • GC-content: 53
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21761

culture collection no.: DSM 29889, JCM 17759, KACC 15560

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21761Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29889Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29889)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/