Strain identifier
BacDive ID: 130534
Type strain:
Species: Novipirellula rosea
Strain Designation: LHWP3
Strain history: J.-W. Bae LHWP3.
NCBI tax ID(s): 1031540 (species)
General
@ref: 21761
BacDive-ID: 130534
DSM-Number: 29889
keywords: 16S sequence, Bacteria, mesophilic
description: Novipirellula rosea LHWP3 is a mesophilic bacterium that was isolated from dead ark clam Scapharca broughtonii from an ark clam farm.
NCBI tax id
- NCBI tax id: 1031540
- Matching level: species
strain history
@ref | history |
---|---|
21761 | <- JCM |
67770 | J.-W. Bae LHWP3. |
doi: 10.13145/bacdive130534.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Planctomycetia
- order: Pirellulales
- family: Pirellulaceae
- genus: Novipirellula
- species: Novipirellula rosea
- full scientific name: Novipirellula rosea (Roh et al. 2014) Kallscheuer et al. 2021
synonyms
- @ref: 20215
- synonym: Rhodopirellula rosea
@ref: 21761
domain: Bacteria
phylum: Planctomycetes
class: Planctomycetia
order: Planctomycetales
family: Pirellulaceae
genus: Rhodopirellula
species: Rhodopirellula rosea
full scientific name: Rhodopirellula rosea Roh et al. 2014
strain designation: LHWP3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21761
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21761 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
21761 | dead ark clam Scapharca broughtonii from an ark clam farm | Scapharca broughtonii | Gangjin Bay | Republic of Korea | KOR | Asia |
67770 | Dead ark clam Scapharca broughtonii from an ark clam farm in Gangjin Bay in the south coastal region of Korea | Scapharca broughtonii |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Aquaculture |
#Host | #Other | #Decomposing animal |
#Host | #Invertebrates (Other) | #Mollusca |
taxonmaps
- @ref: 69479
- File name: preview.99_11489.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_75;96_3304;97_4051;98_5174;99_11489&stattab=map
- Last taxonomy: Rhodopirellula
- 16S sequence: JF748734
- Sequence Identity:
- Total samples: 750
- soil counts: 54
- aquatic counts: 629
- animal counts: 59
- plant counts: 8
Sequence information
16S sequences
- @ref: 21761
- description: Rhodopirellula rosea strain LHWP3 16S ribosomal RNA gene, partial sequence
- accession: JF748734
- length: 1459
- database: ena
- NCBI tax ID: 1031540
GC content
- @ref: 67770
- GC-content: 53
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 21761
culture collection no.: DSM 29889, JCM 17759, KACC 15560
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21761 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29889 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29889) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |