Strain identifier
BacDive ID: 130528
Type strain: 
Species: Mesorhizobium camelthorni
Strain history: <- HAMBI <- W.-M. Chen, College of Life Sciences, Shaanxi, China; CCNWXJ 40-4
NCBI tax ID(s): 475069 (species)
version 8.1 (current version)
General
@ref: 22036
BacDive-ID: 130528
DSM-Number: 100023
keywords: 16S sequence, Bacteria, mesophilic
description: Mesorhizobium camelthorni DSM 100023 is a mesophilic bacterium that was isolated from root nodule of Alhagi sparsifolia.
NCBI tax id
- NCBI tax id: 475069
- Matching level: species
strain history
- @ref: 22036
- history: <- HAMBI <- W.-M. Chen, College of Life Sciences, Shaanxi, China; CCNWXJ 40-4
doi: 10.13145/bacdive130528.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium camelthorni
- full scientific name: Mesorhizobium camelthorni Chen et al. 2011
@ref: 22036
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium camelthorni
full scientific name: Mesorhizobium camelthorni Chen et al. 2011
type strain: yes
Morphology
colony morphology
- @ref: 22036
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22036
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 22036
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 22036 | catalase | + | 1.11.1.6 |
| 22036 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22036 | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 22036
- sample type: root nodule of Alhagi sparsifolia
- host species: Alhagi sparsifolia
- geographic location: Alaer, Xinjiang Province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_8199.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_4645;98_5965;99_8199&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: EU169581
- Sequence Identity:
- Total samples: 5513
- soil counts: 2575
- aquatic counts: 710
- animal counts: 814
- plant counts: 1414
Safety information
risk assessment
- @ref: 22036
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22036
- description: Mesorhizobium camelthorni strain CCNWXJ40-4 16S ribosomal RNA gene, partial sequence
- accession: EU169581
- length: 1363
- database: ena
- NCBI tax ID: 475069
GC content
- @ref: 22036
- GC-content: 63.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 22036
culture collection no.: DSM 100023, ACCC 14549, HAMBI 3020, CCNWXJ 40-4
straininfo link
- @ref: 89051
- straininfo: 405017
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20382787 | Mesorhizobium camelthorni sp. nov., isolated from Alhagi sparsifolia. | Chen WM, Zhu WF, Bontemps C, Young JPW, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.022947-0 | 2010 | Alphaproteobacteria/*classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fabaceae/*microbiology, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 23673873 | Identification of the rhizobial symbiont of Astragalus glombiformis in Eastern Morocco as Mesorhizobium camelthorni. | Guerrouj K, Perez-Valera E, Chahboune R, Abdelmoumen H, Bedmar EJ, El Idrissi MM | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9936-y | 2013 | Astragalus Plant/*microbiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Sequence, DNA, Bacterial/genetics, Genetic Variation, Mesorhizobium/*classification/genetics/*isolation & purification, Morocco, Phylogeny, *Plant Root Nodulation, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Symbiosis | Transcriptome |
| Phylogeny | 29279965 | Mesorhizobium zhangyense sp. nov., isolated from wild Thermopsis lanceolate in northwestern China. | Xu L, Zhang Y, Mohamad OA, Jiang C, Friman VP | Arch Microbiol | 10.1007/s00203-017-1464-0 | 2017 | Base Composition, China, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/analysis/chemistry, Mesorhizobium/chemistry/*genetics/isolation & purification, Molecular Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/analysis/chemistry | Transcriptome |
| Phylogeny | 32866324 | Identification of the endosymbionts from Sulla spinosissima growing in a lead mine tailings in Eastern Morocco as Mesorhizobium camelthorni sv. aridi. | Lamin H, Alami S, Bouhnik O, Bennis M, Benkritly S, Abdelmoumen H, Bedmar EJ, Missbah-El Idrissi M | J Appl Microbiol | 10.1111/jam.14834 | 2020 | Bacterial Proteins/genetics, Fabaceae/*microbiology, Genes, Essential/genetics, Host Specificity, Lead/*metabolism, Mesorhizobium/classification/*physiology, *Mining, Morocco, Phylogeny, Plant Root Nodulation/genetics, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/microbiology, Soil Microbiology, *Symbiosis/genetics | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22036 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100023 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100023) | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89051 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405017.1 |