Strain identifier

BacDive ID: 130525

Type strain: Yes

Species: Aquamicrobium terrae

Strain Designation: hun6

Strain history: <- Y. Ge, China Natl. Res. Inst. of Food and Fermentation Ind., Beijing, China; hun6 <- W. Zhiguo, CAS

NCBI tax ID(s): 1324945 (species)

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General

@ref: 21477

BacDive-ID: 130525

DSM-Number: 27865

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aquamicrobium terrae hun6 is a mesophilic bacterium that was isolated from red brown soil polluted by aromatic compounds.

NCBI tax id

  • NCBI tax id: 1324945
  • Matching level: species

strain history

  • @ref: 21477
  • history: <- Y. Ge, China Natl. Res. Inst. of Food and Fermentation Ind., Beijing, China; hun6 <- W. Zhiguo, CAS

doi: 10.13145/bacdive130525.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Aquamicrobium
  • species: Aquamicrobium terrae
  • full scientific name: Aquamicrobium terrae Wu et al. 2014

@ref: 21477

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Aquamicrobium

species: Aquamicrobium terrae

full scientific name: Aquamicrobium terrae Wu et al. 2014

strain designation: hun6

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21477NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
21477TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 21477
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21477
  • sample type: red brown soil polluted by aromatic compounds
  • geographic location: northern Nanjing (32°14'40''N 118°52'8''E), near a chemical factory
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 32.2444
  • longitude: 118.869

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_81083.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_3245;97_3983;98_32576;99_81083&stattab=map
  • Last taxonomy: Aquamicrobium terrae
  • 16S sequence: KC840671
  • Sequence Identity:
  • Total samples: 155
  • soil counts: 35
  • aquatic counts: 29
  • animal counts: 87
  • plant counts: 4

Safety information

risk assessment

  • @ref: 21477
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21477
  • description: Aquamicrobium terrae strain hun6 16S ribosomal RNA gene, partial sequence
  • accession: KC840671
  • length: 1445
  • database: ena
  • NCBI tax ID: 1324945

Genome sequences

  • @ref: 66792
  • description: Aquamicrobium terrae DSM 27865
  • accession: 2928552194
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1324945

GC content

  • @ref: 21477
  • GC-content: 63.5

External links

@ref: 21477

culture collection no.: DSM 27865, CICC 10733

straininfo link

  • @ref: 89048
  • straininfo: 399005

literature

  • topic: Phylogeny
  • Pubmed-ID: 24788880
  • title: Aquamicrobium terrae sp. nov., isolated from the polluted soil near a chemical factory.
  • authors: Wu ZG, Wang F, Gu CG, Zhang YP, Yang ZZ, Wu XW, Jiang X
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0174-8
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Pollution, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phyllobacteriaceae/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21477Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27865Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27865)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89048Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399005.1