Strain identifier

BacDive ID: 130520

Type strain: Yes

Species: Vespertiliibacter pulmonis

Strain Designation: E127/08

Strain history: <- K. Mühldorfer, Leibniz Institute for Zoo and Wildlife Res., Berlin, Germany; E127/08

NCBI tax ID(s): 1443036 (species)

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General

@ref: 22109

BacDive-ID: 130520

DSM-Number: 27238

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Vespertiliibacter pulmonis E127/08 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from lung of a deceased free-ranging noctule bat .

NCBI tax id

  • NCBI tax id: 1443036
  • Matching level: species

strain history

  • @ref: 22109
  • history: <- K. Mühldorfer, Leibniz Institute for Zoo and Wildlife Res., Berlin, Germany; E127/08

doi: 10.13145/bacdive130520.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Vespertiliibacter
  • species: Vespertiliibacter pulmonis
  • full scientific name: Vespertiliibacter pulmonis Mühldorfer et al. 2014

@ref: 22109

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Vespertiliibacter

species: Vespertiliibacter pulmonis

full scientific name: Vespertiliibacter pulmonis Mühldorfer et al. 2014

strain designation: E127/08

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.979

colony morphology

@refincubation period
221091-2 days
631371 day

Culture and growth conditions

culture medium

  • @ref: 22109
  • name: CHOCOLATE AGAR (DSMZ Medium 429b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429b
  • composition: Name: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
22109positivegrowth37mesophilic
63137positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
22109aerobe
63137microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6837717634D-glucose+builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
22109catalase+1.11.1.6
22109cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377lipase+
68377ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22109+-------------------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
22109++----++--+--
22109-++----++--+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling date
22109lung of a deceased free-ranging noctule bat (Nyctalus noctula)Nyctalus noctulaBerlinGermanyDEUEurope
63137Lung of a noctule bat (Nyctalus noctula)BerlinGermanyDEUEurope2008-03-05

isolation source categories

Cat1Cat2Cat3
#Host#Mammals
#Host Body-Site#Oral cavity and airways#Lung

Sequence information

16S sequences

  • @ref: 22109
  • description: Vespertiliibacter pulmonis strain E127/08 16S ribosomal RNA gene, partial sequence
  • accession: KF031240
  • length: 1462
  • database: ena
  • NCBI tax ID: 1443036

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vespertiliibacter pulmonis CCUG 64585GCA_013377275chromosomencbi1443036
66792Vespertiliibacter pulmonis DSM 27238GCA_003843855scaffoldncbi1443036
66792Vespertiliibacter pulmonis strain CCUG 645851443036.4wgspatric1443036
66792Vespertiliibacter pulmonis strain DSM 272381443036.3wgspatric1443036
66792Vespertiliibacter pulmonis DSM 272382786546143draftimg1443036

GC content

  • @ref: 22109
  • GC-content: 38.2
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.027no
flagellatedno96.751no
gram-positiveno98.776no
anaerobicno99.109yes
aerobicno85.877no
halophileno57.477no
spore-formingno98.786no
thermophileno97.686yes
glucose-utilno78.36yes
glucose-fermentno65.876no

External links

@ref: 22109

culture collection no.: DSM 27238, CCUG 64585

straininfo link

  • @ref: 89043
  • straininfo: 400704

literature

  • topic: Phylogeny
  • Pubmed-ID: 24776530
  • title: Proposal of Vespertiliibacter pulmonis gen. nov., sp. nov. and two genomospecies as new members of the family Pasteurellaceae isolated from European bats.
  • authors: Muhldorfer K, Speck S, Wibbelt G
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.062786-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Chiroptera/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Germany, Molecular Sequence Data, Multilocus Sequence Typing, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22109Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27238Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27238)
63137Curators of the CCUGhttps://www.ccug.se/strain?id=64585Culture Collection University of Gothenburg (CCUG) (CCUG 64585)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89043Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400704.1