Strain identifier
BacDive ID: 1305
Type strain: 
Species: Shouchella hunanensis
Strain history: <- S-K Tang, Yunnan Inst., China
NCBI tax ID(s): 766894 (species)
version 8.1 (current version)
General
@ref: 16648
BacDive-ID: 1305
DSM-Number: 23008
keywords: genome sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Shouchella hunanensis DSM 23008 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 766894
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16648 | <- S.-K. Tang and Y.-G. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; JSM 081003 <- Y.-G. Chen and Q.-H. Chen |
| 67771 | <- S-K Tang, Yunnan Inst., China |
doi: 10.13145/bacdive1305.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Shouchella
- species: Shouchella hunanensis
- full scientific name: Shouchella hunanensis (Patel and Gupta 2020) Joshi et al. 2022
synonyms
@ref synonym 20215 Bacillus hunanensis 20215 Alkalihalobacillus hunanensis
@ref: 16648
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Shouchella
species: Shouchella hunanensis
full scientific name: Shouchella hunanensis (Patel and Gupta 2020) Joshi et al. 2022
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | yes | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 16648
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16648 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | type of spore | spore formation |
|---|---|---|
| 67771 | endospore | yes |
| 69680 | endospore | yes |
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16648 | forest soil | Hunan Province | China | CHN | Asia |
| 67771 | From non-saline forest soil | Hunan Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Sequence information
Genome sequences
- @ref: 66792
- description: Shouchella hunanensis DSM 23008
- accession: GCA_028735875
- assembly level: complete
- database: ncbi
- NCBI tax ID: 766894
GC content
- @ref: 67771
- GC-content: 40.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.393 | yes |
| flagellated | no | 60.246 | no |
| gram-positive | yes | 89.664 | yes |
| anaerobic | no | 98.662 | yes |
| aerobic | yes | 88.63 | no |
| halophile | yes | 89.377 | no |
| spore-forming | yes | 75.411 | no |
| glucose-ferment | no | 85.587 | no |
| thermophile | no | 94.961 | yes |
| glucose-util | yes | 85.783 | no |
External links
@ref: 16648
culture collection no.: DSM 23008, KCTC 13711, JSM 081003
straininfo link
- @ref: 70956
- straininfo: 407490
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20872176 | Bacillus hunanensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil. | Chen YG, Hao DF, Chen QH, Zhang YQ, Liu JB, He JW, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-010-9512-7 | 2010 | Bacillus/*classification/genetics/*metabolism, Base Composition/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/chemistry, Phosphatidylglycerols/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology, *Trees | Metabolism |
| Phylogeny | 25008165 | Bacillus shacheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil. | Lei Z, Qiu P, Ye R, Tian J, Liu Y, Wang L, Tang SK, Li WJ, Tian Y | J Gen Appl Microbiol | DN/JST.JSTAGE/jgam/60.101 | 2014 | Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal |
|---|---|---|---|---|---|
| 16648 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23008) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23008 | ||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
| 69680 | Sudip Patel, Radhey S. Gupta | 10.1099/ijsem.0.003775 | A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. | IJSEM 70: 406-438 2020 | |
| 70956 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407490.1 | StrainInfo: A central database for resolving microbial strain identifiers |