Strain identifier

BacDive ID: 130473

Type strain: No

Species: Thermodesulfovibrio thiophilus

Strain Designation: TSL-P1

Strain history: Y. Sekiguchi TSL-P1.

NCBI tax ID(s): 340095 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21965

BacDive-ID: 130473

DSM-Number: 17286

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Thermodesulfovibrio thiophilus TSL-P1 is an anaerobe, thermophilic bacterium that was isolated from thermophilic anaerobic sewage sludge.

NCBI tax id

  • NCBI tax id: 340095
  • Matching level: species

strain history

@refhistory
21965<- Y. Sekiguchi, Natl. Inst. Advanced Industrial Sci. and Technol., Tsukuba, Japan; TSL-P1 <- Y. Sekiguchi {1998}
67770Y. Sekiguchi TSL-P1.

doi: 10.13145/bacdive130473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/nitrospirota
  • domain: Bacteria
  • phylum: Nitrospirota
  • class: Thermodesulfovibrionia
  • order: Thermodesulfovibrionales
  • family: Thermodesulfovibrionaceae
  • genus: Thermodesulfovibrio
  • species: Thermodesulfovibrio thiophilus
  • full scientific name: Thermodesulfovibrio thiophilus Sekiguchi et al. 2008

@ref: 21965

domain: Bacteria

phylum: Nitrospirae

class: Nitrospira

order: Nitrospirales, not validated

family: Nitrospiraceae

genus: Thermodesulfovibrio

species: Thermodesulfovibrio thiophilus

full scientific name: Thermodesulfovibrio thiophilus Sekiguchi et al. 2008

strain designation: TSL-P1

type strain: no

Morphology

colony morphology

  • @ref: 21965
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

  • @ref: 21965
  • name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/641
  • composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21965positivegrowth55thermophilic
67770positivegrowth55thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21965
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
21965thermophilic anaerobic sewage sludgeJapanJPNAsia
67770Thermophilic methanogenic sludge treating pulp industry wastewater

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Sewage sludge
#Condition#Anoxic (anaerobic)
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3323.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_392;96_1731;97_2072;98_2547;99_3323&stattab=map
  • Last taxonomy: Thermodesulfovibrio
  • 16S sequence: AB021304
  • Sequence Identity:
  • Total samples: 953
  • soil counts: 143
  • aquatic counts: 534
  • animal counts: 256
  • plant counts: 20

Safety information

risk assessment

  • @ref: 21965
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21965
  • description: Thermodesulfovibrio islandicus gene for 16S rRNA
  • accession: AB021304
  • length: 1488
  • database: ena
  • NCBI tax ID: 53423

GC content

  • @ref: 67770
  • GC-content: 34.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21965

culture collection no.: DSM 17286, JCM 13215

straininfo link

  • @ref: 89002
  • straininfo: 403087

literature

  • topic: Phylogeny
  • Pubmed-ID: 18984690
  • title: Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio.
  • authors: Sekiguchi Y, Muramatsu M, Imachi H, Narihiro T, Ohashi A, Harada H, Hanada S, Kamagata Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.2008/000893-0
  • year: 2008
  • mesh: Anaerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, *Hot Temperature, In Situ Hybridization, Fluorescence, Methane/*metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/physiology, Waste Disposal, Fluid/methods
  • topic2: Stress

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21965Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-17286Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17286)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89002Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403087.1