Strain identifier
BacDive ID: 130472
Type strain: 
Species: Nitrosomonas europaea
Strain Designation: Nm50
Strain history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie; Nm50 <- H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg <- S. W. Watson <- D. Pramer
NCBI tax ID(s): 915 (species)
version 8.1 (current version)
General
@ref: 21688
BacDive-ID: 130472
DSM-Number: 28437
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nitrosomonas europaea Nm50 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 915
- Matching level: species
strain history
- @ref: 21688
- history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie; Nm50 <- H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg <- S. W. Watson <- D. Pramer
doi: 10.13145/bacdive130472.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Nitrosomonadaceae
- genus: Nitrosomonas
- species: Nitrosomonas europaea
- full scientific name: Nitrosomonas europaea Winogradsky 1892 (Approved Lists 1980)
@ref: 21688
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Nitrosomonadaceae
genus: Nitrosomonas
species: Nitrosomonas europaea
full scientific name: Nitrosomonas europaea Winogradsky 1892
strain designation: Nm50
type strain: yes
Morphology
colony morphology
- @ref: 21688
- incubation period: >14 days
multimedia
- @ref: 21688
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28437.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21688
- name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1583
- composition: Name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583) Composition: NaCl 0.584 g/l NH4Cl 0.535 g/l CaCl2 x 2 H2O 0.147 g/l KCl 0.074 g/l KH2PO4 0.054 g/l MgSO4 x 7 H2O 0.049 g/l Cresol red 0.001 g/l FeSO4 x 7 H2O 0.000973 g/l H3BO3 4.9e-05 g/l MnSO4 x 4 H2O 4.5e-05 g/l ZnSO4 x 7 H2O 4.3e-05 g/l (NH4)6Mo7O24 x 4 H2O 3.7e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l HCl Distilled water
culture temp
- @ref: 21688
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21688
- sample type: soil
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3035.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_316;96_1595;97_1903;98_2335;99_3035&stattab=map
- Last taxonomy: Nitrosomonas europaea subclade
- 16S sequence: HE862405
- Sequence Identity:
- Total samples: 3451
- soil counts: 516
- aquatic counts: 2316
- animal counts: 518
- plant counts: 101
Safety information
risk assessment
- @ref: 21688
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 21688 | Nitrosomonas europaea gene for 16S rRNA, partial sequence, strain: ATCC25978 | AB070982 | 1373 | ena | 915 |
| 21688 | Nitrosomonas europaea partial 16S rRNA gene, type strain ATCC 25978 | HE862405 | 1462 | ena | 915 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nitrosomonas europaea ATCC 25978 | GCA_900167395 | scaffold | ncbi | 915 |
| 66792 | Nitrosomonas europaea Nm50 | GCA_900106625 | contig | ncbi | 915 |
| 66792 | Nitrosomonas europaea strain ATCC 25978 | 915.9 | wgs | patric | 915 |
| 66792 | Nitrosomonas europaea Nm50 | 2671180134 | draft | img | 915 |
| 66792 | Nitrosomonas europaea ATCC 25978 | 2582581324 | draft | img | 915 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 84.799 | no |
| flagellated | no | 62.621 | no |
| gram-positive | no | 98.568 | no |
| anaerobic | no | 96.294 | no |
| aerobic | no | 68.719 | no |
| halophile | no | 90.209 | no |
| spore-forming | no | 88.762 | no |
| thermophile | no | 92.103 | yes |
| glucose-util | no | 65.478 | no |
| glucose-ferment | no | 88.479 | no |
External links
@ref: 21688
culture collection no.: DSM 28437, ATCC 25978
straininfo link
- @ref: 89001
- straininfo: 38739
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 11976746 | Evaluation of non-cyanobacterial genome sequences for occurrence of genes encoding proteins homologous to cyanophycin synthetase and cloning of an active cyanophycin synthetase from Acinetobacter sp. strain DSM 587. | Krehenbrink M, Oppermann-Sanio FB, Steinbuchel A | Arch Microbiol | 10.1007/s00203-001-0396-9 | 2002 | Acinetobacter/chemistry/classification/*enzymology/*genetics, Amino Acid Sequence, *Bacterial Proteins, Cloning, Molecular, Databases, Genetic, Escherichia coli/enzymology/genetics, Gene Expression, Genes, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Open Reading Frames/genetics, Peptide Synthases/chemistry/*genetics, Phylogeny, Plant Proteins/isolation & purification/metabolism, Sequence Homology, Amino Acid | Enzymology |
| Metabolism | 12710742 | Susceptibility of ammonia-oxidizing bacteria to nitrification inhibitors. | Matsuba D, Takazaki H, Sato Y, Takahashi R, Tokuyama T, Wakabayashi K | Z Naturforsch C J Biosci | 10.1515/znc-2003-3-424 | 2003 | Ammonia/*pharmacokinetics, Bradyrhizobiaceae/classification/*drug effects/*metabolism, DNA, Ribosomal/genetics, Environment, Nitric Oxide/*metabolism, Nitrites/*metabolism, Nitrobacter/drug effects/metabolism, Nitrosomonas/drug effects/metabolism, Oxidation-Reduction, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Triazines/*pharmacology | Phylogeny |
| 16233712 | Nitrosomonas communis strain YNSRA, an ammonia-oxidizing bacterium, isolated from the reed rhizoplane in an aquaponics plant. | Tokuyama T, Mine A, Kamiyama K, Yabe R, Satoh K, Matsumoto H, Takahashi R, Itonaga K | J Biosci Bioeng | 10.1016/S1389-1723(04)00288-9 | 2004 | |||
| 16423010 | Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. | Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI, Baggs EM | Environ Microbiol | 10.1111/j.1462-2920.2005.00882.x | 2006 | Aerobiosis, Air Pollutants/*analysis, Colorimetry, Nitrosomonadaceae/*growth & development, Nitrous Oxide/*analysis, *Soil Microbiology | ||
| 18546459 | Immobilization of Nitrosomonas europaea cells with polyelectrolyte complex. | Kokufuta E, Matsumoto W, Nakamura I | Biotechnol Bioeng | 10.1002/bit.260240712 | 1982 | |||
| Metabolism | 35427829 | Horizontal transfer of the multidrug resistance plasmid RP4 inhibits ammonia nitrogen removal dominated by ammonia-oxidizing bacteria. | Zhao C, Li J, Li C, Xue B, Wang S, Zhang X, Yang X, Shen Z, Bo L, Qiu Z, Wang J | Water Res | 10.1016/j.watres.2022.118434 | 2022 | *Ammonia/metabolism, Anti-Bacterial Agents/pharmacology, Bacteria/metabolism, *Betaproteobacteria/metabolism, Denitrification, Drug Resistance, Multiple, Escherichia coli/genetics, Nitrogen, Oxidation-Reduction, Plasmids/genetics | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21688 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28437 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28437) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89001 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID38739.1 |