Strain identifier

BacDive ID: 130467

Type strain: Yes

Species: Aggregicoccus edonensis

Strain Designation: Ar1733, MCy1366

Strain history: <- S. Sood, HZI, Braunschweig, Germany; Ar1733 <- H. Reichenbach, HZI, Braunschweig, Germany

NCBI tax ID(s): 1450165 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22145

BacDive-ID: 130467

DSM-Number: 27872

keywords: 16S sequence, Bacteria, mesophilic

description: Aggregicoccus edonensis Ar1733 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1450165
  • Matching level: species

strain history

  • @ref: 22145
  • history: <- S. Sood, HZI, Braunschweig, Germany; Ar1733 <- H. Reichenbach, HZI, Braunschweig, Germany

doi: 10.13145/bacdive130467.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Myxococcaceae
  • genus: Aggregicoccus
  • species: Aggregicoccus edonensis
  • full scientific name: Aggregicoccus edonensis Sood et al. 2015

@ref: 22145

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Myxococcaceae

genus: Aggregicoccus

species: Aggregicoccus edonensis

full scientific name: Aggregicoccus edonensis Sood et al. 2015

strain designation: Ar1733, MCy1366

type strain: yes

Morphology

colony morphology

  • @ref: 22145
  • incubation period: 8-14 days

multimedia

  • @ref: 22145
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27872.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 22145
  • name: VY/2 AGAR (DSMZ Medium 9)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/9
  • composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

  • @ref: 22145
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22145
  • sample type: soil
  • geographic location: near Tokyo
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_144920.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_22142;97_30841;98_96118;99_144920&stattab=map
  • Last taxonomy: Aggregicoccus edonensis subclade
  • 16S sequence: KF767690
  • Sequence Identity:
  • Total samples: 5247
  • soil counts: 3833
  • aquatic counts: 427
  • animal counts: 157
  • plant counts: 830

Safety information

risk assessment

  • @ref: 22145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22145
  • description: Aggregicoccus edonensis strain MCy1366 16S ribosomal RNA gene, partial sequence
  • accession: KF767690
  • length: 1531
  • database: ena
  • NCBI tax ID: 1450165

GC content

  • @ref: 22145
  • GC-content: 65.6
  • method: fluorimetric

External links

@ref: 22145

culture collection no.: DSM 27872, NCCB 100468

straininfo link

  • @ref: 88996
  • straininfo: 408236

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24591423Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample.Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kampfer P, Glaeser SP, Schumann P, Garcia R, Muller RInt J Syst Evol Microbiol10.1099/ijs.0.061176-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Myxococcales/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, SwitzerlandGenetics
Phylogeny30113300Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae.Garcia R, Muller RInt J Syst Evol Microbiol10.1099/ijsem.0.0029362018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Myxococcales/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22145Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27872Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27872)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88996Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408236.1