Strain identifier
BacDive ID: 130467
Type strain: 
Species: Aggregicoccus edonensis
Strain Designation: Ar1733, MCy1366
Strain history: <- S. Sood, HZI, Braunschweig, Germany; Ar1733 <- H. Reichenbach, HZI, Braunschweig, Germany
NCBI tax ID(s): 1450165 (species)
version 9 (current version)
General
@ref: 22145
BacDive-ID: 130467
DSM-Number: 27872
keywords: 16S sequence, Bacteria
description: Aggregicoccus edonensis Ar1733 is a bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1450165
- Matching level: species
strain history
- @ref: 22145
- history: <- S. Sood, HZI, Braunschweig, Germany; Ar1733 <- H. Reichenbach, HZI, Braunschweig, Germany
doi: 10.13145/bacdive130467.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Myxococcaceae
- genus: Aggregicoccus
- species: Aggregicoccus edonensis
- full scientific name: Aggregicoccus edonensis Sood et al. 2015
@ref: 22145
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Myxococcaceae
genus: Aggregicoccus
species: Aggregicoccus edonensis
full scientific name: Aggregicoccus edonensis Sood et al. 2015
strain designation: Ar1733, MCy1366
type strain: yes
Morphology
colony morphology
- @ref: 22145
- incubation period: 8-14 days
multimedia
- @ref: 22145
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27872.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22145
- name: VY/2 AGAR (DSMZ Medium 9)
- growth: yes
- link: https://mediadive.dsmz.de/medium/9
- composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
culture temp
- @ref: 22145
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 22145
- sample type: soil
- geographic location: near Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_144920.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_22142;97_30841;98_96118;99_144920&stattab=map
- Last taxonomy: Aggregicoccus edonensis subclade
- 16S sequence: KF767690
- Sequence Identity:
- Total samples: 5247
- soil counts: 3833
- aquatic counts: 427
- animal counts: 157
- plant counts: 830
Safety information
risk assessment
- @ref: 22145
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22145
- description: Aggregicoccus edonensis strain MCy1366 16S ribosomal RNA gene, partial sequence
- accession: KF767690
- length: 1531
- database: nuccore
- NCBI tax ID: 1450165
GC content
- @ref: 22145
- GC-content: 65.6
- method: fluorimetric
External links
@ref: 22145
culture collection no.: DSM 27872, NCCB 100468
straininfo link
- @ref: 88996
- straininfo: 408236
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24591423 | Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample. | Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kampfer P, Glaeser SP, Schumann P, Garcia R, Muller R | Int J Syst Evol Microbiol | 10.1099/ijs.0.061176-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Myxococcales/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Switzerland | Genetics |
| Phylogeny | 30113300 | Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae. | Garcia R, Muller R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002936 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Myxococcales/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22145 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27872 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27872) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88996 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408236.1 |