Strain identifier

BacDive ID: 130463

Type strain: Yes

Species: Faucicola mancuniensis

Strain Designation: GVCNT2

Strain history: <- G. Humphreys, Univ. Manchester, United Kingdom; GVCNT2

NCBI tax ID(s): 1309795 (species)

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General

@ref: 22138

BacDive-ID: 130463

DSM-Number: 28411

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Faucicola mancuniensis GVCNT2 is an aerobe, mesophilic bacterium that was isolated from tonsils of healthy adult female.

NCBI tax id

  • NCBI tax id: 1309795
  • Matching level: species

strain history

  • @ref: 22138
  • history: <- G. Humphreys, Univ. Manchester, United Kingdom; GVCNT2

doi: 10.13145/bacdive130463.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Faucicola
  • species: Faucicola mancuniensis
  • full scientific name: Faucicola mancuniensis Humphreys et al. 2015

@ref: 22138

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Faucicola

species: Faucicola mancuniensis

full scientific name: Faucicola mancuniensis Humphreys et al. 2015

strain designation: GVCNT2

type strain: yes

Morphology

colony morphology

  • @ref: 22138
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22138
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 22138
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22138
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
22138catalase+1.11.1.6
22138cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377lipase+
68377ornithine decarboxylase-4.1.1.17
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22138--------------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
22138++/-+/-+--++-----
22138-++/-+/-+--++----

Isolation, sampling and environmental information

isolation

  • @ref: 22138
  • sample type: tonsils of healthy adult female
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body-Site#Oral cavity and airways
#Host#Human#Female

taxonmaps

  • @ref: 69479
  • File name: preview.99_170254.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_63516;97_82376;98_111584;99_170254&stattab=map
  • Last taxonomy: Faucicola mancuniensis subclade
  • 16S sequence: KC688888
  • Sequence Identity:
  • Total samples: 2906
  • soil counts: 26
  • aquatic counts: 114
  • animal counts: 2758
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 22138
  • description: Faucicola mancuniensis strain GVCNT2 16S ribosomal RNA gene, partial sequence
  • accession: KC688888
  • length: 1430
  • database: ena
  • NCBI tax ID: 1309795

GC content

  • @ref: 22138
  • GC-content: 40.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22138

culture collection no.: DSM 28411, NCIMB 14946

straininfo link

  • @ref: 88992
  • straininfo: 396910

literature

  • topic: Phylogeny
  • Pubmed-ID: 25267870
  • title: Faucicola mancuniensis gen. nov., sp. nov., isolated from the human oropharynx.
  • authors: Humphreys GJ, Oates A, Ledder RG, McBain AJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.066837-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Humans, Molecular Sequence Data, Moraxellaceae/*classification/genetics/isolation & purification, Oropharynx/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22138Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28411Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28411)
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88992Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396910.1