Strain identifier
BacDive ID: 130451
Type strain:
Species: Acinetobacter harbinensis
Strain Designation: CGMCC1.12528
Strain history: CIP <- 2014, KCTC
NCBI tax ID(s): 1353941 (species)
General
@ref: 21452
BacDive-ID: 130451
DSM-Number: 100418
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, oval-shaped
description: Acinetobacter harbinensis CGMCC1.12528 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from river water.
NCBI tax id
- NCBI tax id: 1353941
- Matching level: species
strain history
@ref | history |
---|---|
33636 | 2014, KCTC |
21452 | <- KCTC <- W. Li; HITLi 7 |
119838 | CIP <- 2014, KCTC |
doi: 10.13145/bacdive130451.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter harbinensis
- full scientific name: Acinetobacter harbinensis Li et al. 2014
@ref: 21452
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter harbinensis
full scientific name: Acinetobacter harbinensis Li et al. 2014
strain designation: CGMCC1.12528
type strain: yes
Morphology
cell morphology
- @ref: 119838
- gram stain: negative
- cell shape: oval-shaped
- motility: no
colony morphology
- @ref: 21452
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33636 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
21452 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
21452 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
119838 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21452 | positive | growth | 25 | mesophilic |
33636 | positive | growth | 30 | mesophilic |
63650 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63650
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
21452 | catalase | + | 1.11.1.6 |
21452 | cytochrome-c oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21452 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21452 | river water | Songhua River, Harbin | China | CHN | Asia |
63650 | River water | Harbin,Songhua River | China | CHN | Asia |
119838 | Environment, Surface water | Songhua river, China | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
taxonmaps
- @ref: 69479
- File name: preview.99_904.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_38;98_41;99_904&stattab=map
- Last taxonomy: Acinetobacter harbinensis
- 16S sequence: KC843488
- Sequence Identity:
- Total samples: 331
- soil counts: 13
- aquatic counts: 139
- animal counts: 163
- plant counts: 16
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21452 | 1 | Risk group (German classification) |
119838 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21452
- description: Acinetobacter harbinensis strain HITLi 7 16S ribosomal RNA gene, partial sequence
- accession: KC843488
- length: 1328
- database: ena
- NCBI tax ID: 1353941
GC content
- @ref: 21452
- GC-content: 45.5
External links
@ref: 21452
culture collection no.: DSM 100418, CGMCC 1.12528, HITLi 7, KCTC 32411, CCUG 69700, CIP 110764
straininfo link
@ref | straininfo |
---|---|
88978 | 403533 |
88979 | 408529 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24478215 | Acinetobacter harbinensis sp. nov., isolated from river water. | Li W, Zhang D, Huang X, Qin W | Int J Syst Evol Microbiol | 10.1099/ijs.0.055251-0 | 2014 | Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA | Genetics |
Genetics | 25744987 | Draft Genome Sequences of Acinetobacter harbinensis Strain HITLi 7T, Isolated from River Water. | Zhang D, Li W, Qin W, Huang X, Gong X | Genome Announc | 10.1128/genomeA.00028-15 | 2015 | Phylogeny | |
Metabolism | 28681296 | Seasonal-related effects on ammonium removal in activated carbon filter biologically enhanced by heterotrophic nitrifying bacteria for drinking water treatment. | Qin W, Li WG, Gong XJ, Huang XF, Fan WB, Zhang D, Yao P, Wang XJ, Song Y | Environ Sci Pollut Res Int | 10.1007/s11356-017-9522-3 | 2017 | Acinetobacter/*metabolism, Ammonium Compounds/*analysis, Bioreactors/microbiology, Charcoal/*chemistry, China, Drinking Water/*chemistry/standards, Filtration, Heterotrophic Processes, Seasons, Water Pollutants, Chemical/*analysis, Water Purification/*methods, Water Quality | Enzymology |
29573607 | Substrates removal and growth kinetic characteristics of a heterotrophic nitrifying-aerobic denitrifying bacterium, Acinetobacter harbinensis HITLi7(T) at 2 degrees C. | Zheng Z, Zhang D, Li W, Qin W, Huang X, Lv L | Bioresour Technol | 10.1016/j.biortech.2018.03.065 | 2018 | *Acinetobacter, Aerobiosis, *Denitrification, Heterotrophic Processes, Nitrification, Nitrogen | ||
31022577 | Effect of iron and manganese on ammonium removal from micro-polluted source water by immobilized HITLi7(T) at 2 degrees C. | Zheng Z, Li W, Zhang D, Qin W, Zhao Y, Lv L | Bioresour Technol | 10.1016/j.biortech.2019.121367 | 2019 | *Ammonium Compounds, Charcoal, Iron, Manganese, *Water Pollutants, Chemical | ||
Phylogeny | 32725341 | Acinetobacter mesopotamicus sp. nov., Petroleum-degrading Bacterium, Isolated from Petroleum-Contaminated Soil in Diyarbakir, in the Southeast of Turkey. | Acer O, Guven K, Poli A, Di Donato P, Leone L, Buono L, Guven RG, Nicolaus B, Finore I | Curr Microbiol | 10.1007/s00284-020-02134-9 | 2020 | *Acinetobacter/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, *Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, Turkey | Transcriptome |
Phylogeny | 33196408 | Acinetobacter lanii sp. nov., Acinetobacter shaoyimingii sp. nov. and Acinetobacter wanghuae sp. nov., isolated from faeces of Equus kiang. | Zhu W, Dong K, Yang J, Lu S, Lai XH, Pu J, Jin D, Huang Y, Zhang S, Zhou J, Huang Y, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004567 | 2020 | Acinetobacter/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Equidae/*microbiology, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21452 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100418 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100418) | |
33636 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30575 | ||
63650 | Curators of the CCUG | https://www.ccug.se/strain?id=69700 | Culture Collection University of Gothenburg (CCUG) (CCUG 69700) | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88978 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403533.1 | |
88979 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408529.1 | |
119838 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110764 | Collection of Institut Pasteur (CIP 110764) |