Strain identifier
BacDive ID: 130450
Type strain:
Species: Acinetobacter nectaris
Strain history: CIP <- 2012, CECT <- Alvarez-Perez strain: SAP 763.2
NCBI tax ID(s): 1392540 (strain), 1219382 (species)
General
@ref: 21451
BacDive-ID: 130450
DSM-Number: 29975
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped
description: Acinetobacter nectaris CCUG 68431 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Floral nectar of the plant species Muscari comosum.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1219382 | species |
1392540 | strain |
strain history
@ref | history |
---|---|
21451 | <- CECT <- S. Álvarez-Pérez, CSIC, Estación Biológica de Doñana |
121255 | CIP <- 2012, CECT <- Alvarez-Perez strain: SAP 763.2 |
doi: 10.13145/bacdive130450.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter nectaris
- full scientific name: Acinetobacter nectaris Álvarez-Pérez et al. 2013
@ref: 21451
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter nectaris
full scientific name: Acinetobacter nectaris Álvarez-Pérez et al. 2013
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30741 | negative | 1.5 µm | 1.5 µm | ovoid-shaped | no | |
69480 | no | 90.647 | ||||
69480 | negative | 99.999 | ||||
121255 | positive | oval-shaped | no |
colony morphology
@ref | incubation period |
---|---|
21451 | 1-2 days |
63485 | 1 day |
pigmentation
- @ref: 30741
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
42140 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
21451 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
21451 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
121255 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21451 | positive | growth | 30 | mesophilic |
30741 | positive | optimum | 25-30 | mesophilic |
42140 | positive | growth | 25 | mesophilic |
63485 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30741 | aerobe |
63485 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
30741 | no | |
69481 | no | 100 |
69480 | no | 99.999 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30741 | 22653 | asparagine | + | carbon source |
30741 | 35391 | aspartate | + | carbon source |
30741 | 28757 | fructose | + | carbon source |
30741 | 29987 | glutamate | + | carbon source |
30741 | 25115 | malate | + | carbon source |
30741 | 37684 | mannose | + | carbon source |
30741 | 26271 | proline | + | carbon source |
30741 | 30031 | succinate | + | carbon source |
30741 | 17992 | sucrose | + | carbon source |
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | + | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
21451 | catalase | + | 1.11.1.6 |
30741 | catalase | + | 1.11.1.6 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21451 | - | - | + | - | - | - | - | - | + | - | - | - | - | - | + | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|---|
21451 | Floral nectar of the plant species Muscari comosum | Muscari comosum | Hinojos (Huelva) | Spain | ESP | Europe | |
63485 | Floral nectar,plant species Muscari comosum | Huelva | Spain | ESP | Europe | 2011 | |
121255 | Plant, Floral nectar of wild mediterranean insect-pollinated plants. host plant = Muscari comosum | Hinojos (Huelva, Spain) | Spain | ESP | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Flower |
#Host Body Product | #Plant | #Nectar |
taxonmaps
- @ref: 69479
- File name: preview.99_1188.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_695;97_810;98_938;99_1188&stattab=map
- Last taxonomy: Acinetobacter nectaris
- 16S sequence: JQ771132
- Sequence Identity:
- Total samples: 5475
- soil counts: 310
- aquatic counts: 1357
- animal counts: 3298
- plant counts: 510
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21451 | 1 | Risk group (German classification) |
121255 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21451
- description: Acinetobacter nectaris strain SAP 763.2 16S ribosomal RNA gene, partial sequence
- accession: JQ771132
- length: 1498
- database: ena
- NCBI tax ID: 1392540
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter nectaris CIP 110549 | GCA_000488215 | scaffold | ncbi | 1392540 |
66792 | Acinetobacter nectaris CIP 110549 | 1392540.3 | wgs | patric | 1392540 |
66792 | Acinetobacter nectaris CIP 110549 | 2582580904 | draft | img | 1392540 |
GC content
- @ref: 21451
- GC-content: 36.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 91.847 | yes |
flagellated | no | 96.651 | yes |
gram-positive | no | 97.472 | yes |
anaerobic | no | 97.516 | no |
aerobic | yes | 65.175 | no |
halophile | no | 80.413 | no |
spore-forming | no | 97.591 | no |
thermophile | no | 99.784 | yes |
glucose-util | no | 54.697 | yes |
glucose-ferment | no | 76.874 | yes |
External links
@ref: 21451
culture collection no.: CCUG 68431, CIP 110549, DSM 29975, CECT 8127, LMG 26958, SAP 763.2
straininfo link
- @ref: 88977
- straininfo: 379900
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22904213 | Acinetobacter nectaris sp. nov. and Acinetobacter boissieri sp. nov., isolated from floral nectar of wild Mediterranean insect-pollinated plants. | Alvarez-Perez S, Lievens B, Jacquemyn H, Herrera CM | Int J Syst Evol Microbiol | 10.1099/ijs.0.043489-0 | 2012 | Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Flowers/microbiology, Insecta, Mediterranean Region, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Nectar/*analysis, Pollination, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 25098562 | Acinetobacter apis sp. nov., isolated from the intestinal tract of a honey bee, Apis mellifera. | Kim PS, Shin NR, Kim JY, Yun JH, Hyun DW, Bae JW | J Microbiol | 10.1007/s12275-014-4078-0 | 2014 | Acinetobacter/chemistry/*classification/genetics/*isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Bees/*microbiology, DNA, Bacterial/genetics, Fatty Acids/*analysis, Genotype, Intestines/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phosphatidylethanolamines/isolation & purification, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/isolation & purification | Genetics |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
21451 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29975 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29975) | ||||
30741 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27072 | 28776041 | ||
42140 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8420 | |||||
63485 | Curators of the CCUG | https://www.ccug.se/strain?id=68431 | Culture Collection University of Gothenburg (CCUG) (CCUG 68431) | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
68369 | Automatically annotated from API 20NE | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||||
88977 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379900.1 | ||||
121255 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110549 | Collection of Institut Pasteur (CIP 110549) |