Strain identifier
BacDive ID: 130445
Type strain: 
Species: Micromonospora fiedleri
Strain Designation: MG-37
Strain history: <- NRRL; NRRL B-24892 <- M. Goodfellow; MG-37
NCBI tax ID(s): 1157498 (species)
version 8.1 (current version)
General
@ref: 21864
BacDive-ID: 130445
DSM-Number: 46741
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Micromonospora fiedleri MG-37 is a mesophilic bacterium that was isolated from sediment.
NCBI tax id
- NCBI tax id: 1157498
- Matching level: species
strain history
- @ref: 21864
- history: <- NRRL; NRRL B-24892 <- M. Goodfellow; MG-37
doi: 10.13145/bacdive130445.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora fiedleri
- full scientific name: Micromonospora fiedleri (Goodfellow et al. 2013) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Verrucosispora fiedleri
@ref: 21864
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora fiedleri
full scientific name: Micromonospora fiedleri (Goodfellow et al. 2013) Nouioui et al. 2018
strain designation: MG-37
type strain: yes
Morphology
multimedia
- @ref: 21864
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46741.jpg
- caption: Medium 65 28°C
- intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21864 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf | |
| 21864 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
- @ref: 21864
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21864
- sample type: sediment
- geographic location: Raune Fjord
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_4596.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_2781;98_3452;99_4596&stattab=map
- Last taxonomy: Micromonospora
- 16S sequence: JQ423921
- Sequence Identity:
- Total samples: 449
- soil counts: 308
- aquatic counts: 47
- animal counts: 71
- plant counts: 23
Safety information
risk assessment
- @ref: 21864
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21864
- description: Verrucosispora fiedleri strain MG-37 16S ribosomal RNA gene, partial sequence
- accession: JQ423921
- length: 1429
- database: ena
- NCBI tax ID: 1157498
Genome sequences
- @ref: 66792
- description: Micromonospora fiedleri MG-37
- accession: GCA_016774385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1157498
GC content
- @ref: 21864
- GC-content: 72.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.553 | no |
| gram-positive | yes | 91.645 | no |
| anaerobic | no | 99.215 | no |
| aerobic | yes | 92.542 | no |
| halophile | no | 94.727 | no |
| spore-forming | yes | 95.892 | no |
| thermophile | no | 98.639 | no |
| glucose-util | yes | 87.7 | no |
| motile | no | 93.824 | no |
| glucose-ferment | no | 91.507 | no |
External links
@ref: 21864
culture collection no.: DSM 46741, NCIMB 14794, NRRL B-24892
straininfo link
- @ref: 88973
- straininfo: 406188
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23111784 | Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins. | Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9831-y | 2012 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Estuaries, Geologic Sediments/*microbiology, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Norway, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 28940085 | Verrucosispora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. | Xie QY, Bao XD, Ma QY, Kong FD, Zhou ML, Yan B, Zhao YX | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0933-4 | 2017 | Actinobacteria/chemistry/*classification/genetics/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology | Phenotype |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21864 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46741 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46741) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88973 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406188.1 |