Strain identifier

BacDive ID: 130443

Type strain: Yes

Species: Micromonospora zeae

Strain Designation: NEAU-gq9

Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-gq9 <- Y. Shen, Harbin,China

NCBI tax ID(s): 1286226 (species)

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General

@ref: 21676

BacDive-ID: 130443

DSM-Number: 45882

keywords: 16S sequence, Bacteria, mesophilic

description: Micromonospora zeae NEAU-gq9 is a mesophilic bacterium that was isolated from zea mays L..

NCBI tax id

  • NCBI tax id: 1286226
  • Matching level: species

strain history

  • @ref: 21676
  • history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-gq9 <- Y. Shen, Harbin,China

doi: 10.13145/bacdive130443.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora zeae
  • full scientific name: Micromonospora zeae Shen et al. 2014

@ref: 21676

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora zeae

full scientific name: Micromonospora zeae Shen et al. 2014

strain designation: NEAU-gq9

type strain: yes

Morphology

multimedia

  • @ref: 21676
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45882.jpg
  • caption: Medium 554 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21676N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
21676TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
21676GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21676GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

  • @ref: 21676
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21676
  • sample type: zea mays L.
  • geographic location: Heilongjiang Province, Harbin
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_10152.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_1111;98_1509;99_10152&stattab=map
  • Last taxonomy: Micromonospora
  • 16S sequence: KC287242
  • Sequence Identity:
  • Total samples: 53
  • soil counts: 33
  • aquatic counts: 11
  • animal counts: 7
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 21676
  • description: Micromonospora zeae strain NEAU-gq9 16S ribosomal RNA gene, partial sequence
  • accession: KC287242
  • length: 1510
  • database: ena
  • NCBI tax ID: 1286226

External links

@ref: 21676

culture collection no.: DSM 45882

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24849538Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.).Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang WJ Antibiot (Tokyo)10.1038/ja.2014.542014DNA, Bacterial/*genetics, Micromonospora/genetics/*isolation & purification, Nucleic Acid Hybridization, Phylogeny, Plant Roots, RNA, Ribosomal, 16S/*genetics, Zea mays/*microbiologyEnzymology
Phylogeny27902235Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0016142017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonospora/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptophyta/*microbiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21676Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45882Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45882)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/