Strain identifier
BacDive ID: 130442
Type strain:
Species: Dactylosporangium cerinum
Strain Designation: NEAU-TPG4
Strain history: CGMCC 4.7152 <-- C. Liu; Northeast Agric. Univ., China; NEAU-TPG4.
NCBI tax ID(s): 1434730 (species)
General
@ref: 21568
BacDive-ID: 130442
DSM-Number: 46712
keywords: 16S sequence, Bacteria, mesophilic
description: Dactylosporangium cerinum NEAU-TPG4 is a mesophilic bacterium that was isolated from rhizosphere soil of Pinus koraiensis Sieb. et Zucc..
NCBI tax id
- NCBI tax id: 1434730
- Matching level: species
strain history
@ref | history |
---|---|
21568 | <- C. Liu, School of Life Science,Harbin,China; NEAU-TPG4 |
67770 | CGMCC 4.7152 <-- C. Liu; Northeast Agric. Univ., China; NEAU-TPG4. |
doi: 10.13145/bacdive130442.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Dactylosporangium
- species: Dactylosporangium cerinum
- full scientific name: Dactylosporangium cerinum Liu et al. 2015
@ref: 21568
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Dactylosporangium
species: Dactylosporangium cerinum
full scientific name: Dactylosporangium cerinum Liu et al. 2015
strain designation: NEAU-TPG4
type strain: yes
Morphology
colony morphology
@ref | colony color | medium used |
---|---|---|
69464 | Daffodil yellow (1007) | ISP 2 |
69464 | Ivory (1014) | ISP 6 |
69464 | Ivory (1014), golden yellow (1024) | suter with tyrosine |
69464 | Ivory (1014), golden yellow (1024) | suter without tyrosine |
69464 | Light ivory (1015) | ISP 5 |
69464 | Light ivory (1015), ochre yellow (1024) | ISP 7 |
69464 | Pastel yellow (1034) | ISP 3 |
69464 | Saffron yellow (1017) | ISP 4 |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name |
---|---|---|---|
69464 | no | Aerial mycelium | ISP 2 |
69464 | no | Aerial mycelium | ISP 3 |
69464 | no | Aerial mycelium | ISP 4 |
69464 | no | Aerial mycelium | ISP 5 |
69464 | no | Aerial mycelium | ISP 6 |
69464 | no | Aerial mycelium | ISP 7 |
69464 | no | Aerial mycelium | suter with tyrosine |
69464 | no | Aerial mycelium | suter without tyrosine |
pigmentation
@ref | production | name | color |
---|---|---|---|
69464 | no | Melanin | |
69464 | yes | soluble pigment | Golden yellow (1004), beige (1001) |
multimedia
- @ref: 21568
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46712.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21568 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
21568 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
21568 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21568 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
halophily
- @ref: 69464
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0 %
observation
- @ref: 67770
- observation: quinones: MK-9(H8), MK-9(H6)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69464 | 22599 | arabinose | + | growth |
69464 | 62968 | cellulose | +/- | growth |
69464 | 28757 | fructose | + | growth |
69464 | 17234 | glucose | + | growth |
69464 | 17268 | inositol | +/- | growth |
69464 | 37684 | mannose | + | growth |
69464 | 16634 | raffinose | + | growth |
69464 | 26546 | rhamnose | + | growth |
69464 | 17992 | sucrose | + | growth |
69464 | 18222 | xylose | + | growth |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | + | fermentation |
68379 | 16899 | D-mannitol | + | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69464 | - | + | - | - | - | - | + | +/- | + | - | - | + | - | + | + | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69464 | + | +/- | +/- | - | + | +/- | - | + | - | + | +/- | +/- | + | - | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|---|
21568 | rhizosphere soil of Pinus koraiensis Sieb. et Zucc. | Pinus koraiensis | Heilongjiang Province, Luobei (48°8' N, 130°40'E) | China | CHN | Asia | 48.1333 | 130.667 |
67770 | Rhizosphere soil of Pinus koraiensis Sieb. et Zucc. from Luobei | Pinus koraiensis | Heilongjiang Province, north China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_875.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_521;97_600;98_690;99_875&stattab=map
- Last taxonomy: Dactylosporangium
- 16S sequence: KF928748
- Sequence Identity:
- Total samples: 1735
- soil counts: 1581
- aquatic counts: 58
- animal counts: 75
- plant counts: 21
Safety information
risk assessment
- @ref: 21568
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21568
- description: Dactylosporangium cerinum strain NEAU-TPG4 16S ribosomal RNA gene, partial sequence
- accession: KF928748
- length: 1509
- database: ena
- NCBI tax ID: 1434730
GC content
- @ref: 21568
- GC-content: 71.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 21568
culture collection no.: DSM 46712, CGMCC 4.7152, JCM 31767
straininfo link
- @ref: 88971
- straininfo: 405462
literature
- topic: Phylogeny
- Pubmed-ID: 25987396
- title: Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc.
- authors: Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0478-3
- year: 2015
- mesh: Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Japan, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Vitamin K 2/analysis
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21568 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46712 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46712) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69464 | Wink, J. | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | https://cdn.dsmz.de/wink/DSM%2046712.pdf | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88971 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405462.1 |