Strain identifier
BacDive ID: 130436
Type strain: 
Species: Sinomonas humi
Strain history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 117
NCBI tax ID(s): 1338436 (species)
version 8.1 (current version)
General
@ref: 22067
BacDive-ID: 130436
DSM-Number: 29362
keywords: 16S sequence, Bacteria, mesophilic
description: Sinomonas humi DSM 29362 is a mesophilic bacterium that was isolated from mangrove forest soil.
NCBI tax id
- NCBI tax id: 1338436
- Matching level: species
strain history
- @ref: 22067
- history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 117
doi: 10.13145/bacdive130436.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Sinomonas
- species: Sinomonas humi
- full scientific name: Sinomonas humi Lee et al. 2015
@ref: 22067
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Sinomonas
species: Sinomonas humi
full scientific name: Sinomonas humi Lee et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22067
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22067
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22067
- sample type: mangrove forest soil
- geographic location: State of Pahang, Tanjung Lumpur, site MUSC-TLS1 (3° 48' 3.2'' N 103° 20' 11.0'' E)
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.8009
- longitude: 103.336
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 22067
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22067
- description: Sinomonas humi strain MUSC 117 16S ribosomal RNA gene, partial sequence
- accession: KC964537
- length: 1493
- database: ena
- NCBI tax ID: 1338436
GC content
- @ref: 22067
- GC-content: 67.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 22067
culture collection no.: DSM 29362, MCCC 1K00410, NBRC 110653, MUSC 117
straininfo link
- @ref: 88966
- straininfo: 406922
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25563924 | Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. | Lee LH, Azman AS, Zainal N, Yin WF, Mutalib NA, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.000053 | 2015 | Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Malaysia, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Genetics | 26024612 | Draft genome of amylolytic actinobacterium, Sinomonas humi MUSC 117(T) isolated from intertidal soil. | Ser HL, Tan WS, Cheng HJ, Yin WF, Chan KG, Lee LH | Mar Genomics | 10.1016/j.margen.2015.05.012 | 2015 | Gene Expression Regulation, Bacterial, *Genome, Bacterial, Micrococcaceae/*genetics, *Soil Microbiology | |
| 28611495 | Antibacterial, Anticancer and Neuroprotective Activities of Rare Actinobacteria from Mangrove Forest Soils. | Azman AS, Othman I, Fang CM, Chan KG, Goh BH, Lee LH | Indian J Microbiol | 10.1007/s12088-016-0627-z | 2016 | |||
| Phylogeny | 31181735 | Characterization of Sinomonas gamaensis sp. nov., a Novel Soil Bacterium with Antifungal Activity against Exserohilum turcicum. | Fu Y, Yan R, Liu D, Zhao J, Song J, Wang X, Cui L, Zhang J, Xiang W | Microorganisms | 10.3390/microorganisms7060170 | 2019 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22067 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29362 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29362) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 88966 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406922.1 |