Strain identifier
BacDive ID: 130434
Type strain: 
Species: Nesterenkonia massiliensis
Strain Designation: NP1
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; NP1
NCBI tax ID(s): 1232429 (species)
version 8.1 (current version)
General
@ref: 21686
BacDive-ID: 130434
DSM-Number: 26221
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nesterenkonia massiliensis NP1 is a mesophilic bacterium that was isolated from human feces, 32-year-old woman suffering from AIDS.
NCBI tax id
- NCBI tax id: 1232429
- Matching level: species
strain history
- @ref: 21686
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; NP1
doi: 10.13145/bacdive130434.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Nesterenkonia
- species: Nesterenkonia massiliensis
- full scientific name: Nesterenkonia massiliensis Edouard et al. 2016
@ref: 21686
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Nesterenkonia
species: Nesterenkonia massiliensis
full scientific name: Nesterenkonia massiliensis Edouard et al. 2016
strain designation: NP1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21686
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21686
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21686
- sample type: human feces, 32-year-old woman suffering from AIDS
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Host | #Human | #Female |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_3130.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1530;97_1952;98_2401;99_3130&stattab=map
- Last taxonomy: Nesterenkonia
- 16S sequence: JX424770
- Sequence Identity:
- Total samples: 1276
- soil counts: 81
- aquatic counts: 167
- animal counts: 1013
- plant counts: 15
Safety information
risk assessment
- @ref: 21686
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21686
- description: Nesterenkonia massiliensis strain NP1 16S ribosomal RNA gene, partial sequence
- accession: JX424770
- length: 1433
- database: ena
- NCBI tax ID: 1232429
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nesterenkonia massiliensis NP1 | GCA_000455245 | scaffold | ncbi | 1232429 |
| 66792 | Nesterenkonia massiliensis NP1 | 2602041911 | draft | img | 1232429 |
GC content
- @ref: 21686
- GC-content: 62.47
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.589 | no |
| flagellated | no | 96.632 | no |
| gram-positive | yes | 91.164 | no |
| anaerobic | no | 99.025 | no |
| aerobic | yes | 93.509 | no |
| halophile | yes | 75.267 | no |
| spore-forming | no | 93.86 | no |
| thermophile | no | 97.882 | no |
| glucose-util | yes | 88.374 | no |
| glucose-ferment | no | 82.779 | no |
External links
@ref: 21686
culture collection no.: DSM 26221, CSUR P244
straininfo link
- @ref: 88964
- straininfo: 402459
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21686 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26221 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26221) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88964 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402459.1 |