Strain identifier
BacDive ID: 130422
Type strain: 
Species: Pseudarthrobacter enclensis
Strain Designation: NIO-08, NIO-1008
Strain history: <- S. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1008
NCBI tax ID(s): 993070 (species)
version 8.1 (current version)
General
@ref: 21485
BacDive-ID: 130422
DSM-Number: 25279
keywords: genome sequence, 16S sequence, Bacteria
description: Pseudarthrobacter enclensis NIO-08 is a bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 993070
- Matching level: species
strain history
- @ref: 21485
- history: <- S. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1008
doi: 10.13145/bacdive130422.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Pseudarthrobacter
- species: Pseudarthrobacter enclensis
- full scientific name: Pseudarthrobacter enclensis (Dastager et al. 2015) Busse and Schumann 2019
synonyms
- @ref: 20215
- synonym: Arthrobacter enclensis
@ref: 21485
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter enclensis
full scientific name: Arthrobacter enclensis Dastager et al. 2015
strain designation: NIO-08, NIO-1008
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.501 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 97 |
| 69480 | no | 99.842 |
Isolation, sampling and environmental information
isolation
- @ref: 21485
- sample type: marine sediment
- geographic location: Goa Province, Chorao Island (15°32'34''N 73°55'15'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 15.5428
- longitude: 73.9208
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_4553.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_3422;99_4553&stattab=map
- Last taxonomy: Pseudarthrobacter
- 16S sequence: JF421614
- Sequence Identity:
- Total samples: 386
- soil counts: 209
- aquatic counts: 14
- animal counts: 112
- plant counts: 51
Sequence information
16S sequences
- @ref: 21485
- description: Arthrobacter enclensis strain NIO-1008 16S ribosomal RNA gene, partial sequence
- accession: JF421614
- length: 1415
- database: ena
- NCBI tax ID: 993070
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudarthrobacter enclensis NIO-1008 | GCA_001457025 | scaffold | ncbi | 993070 |
| 66792 | Pseudarthrobacter enclensis NIO-1008 | GCA_900094675 | scaffold | ncbi | 993070 |
| 66792 | Arthrobacter enclensis strain NIO-1008 | 993070.4 | wgs | patric | 993070 |
GC content
- @ref: 21485
- GC-content: 61.3
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| flagellated | no | 96.2 | no |
| gram-positive | yes | 93.809 | no |
| anaerobic | no | 99.661 | no |
| aerobic | yes | 95.978 | no |
| halophile | no | 88.684 | no |
| spore-forming | no | 82.583 | no |
| glucose-util | yes | 83.014 | no |
| motile | no | 89.582 | no |
| thermophile | no | 98.905 | no |
| glucose-ferment | no | 90.581 | no |
External links
@ref: 21485
culture collection no.: DSM 25279, NCIM 5488
literature
- topic: Phylogeny
- Pubmed-ID: 31424381
- title: Reclassification of Arthrobacter enclensis as Pseudarthrobacter enclensis comb. nov., and emended descriptions of the genus Pseudarthrobacter, and the species Pseudarthrobacter phenanthrenivorans and Pseudarthrobacter scleromae.
- authors: Busse HJ, Schumann P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003652
- year: 2019
- mesh: Arthrobacter/*classification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Micrococcaceae/*classification, Peptidoglycan/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21485 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25279 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25279) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |