Strain identifier

BacDive ID: 130417

Type strain: Yes

Species: Gryllotalpicola soli

Strain Designation: KIS12-7

Strain history: <- S.-W. Kwon, KACC; KIS12-7

NCBI tax ID(s): 1542726 (species)

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General

@ref: 22093

BacDive-ID: 130417

DSM-Number: 27182

keywords: 16S sequence, Bacteria

description: Gryllotalpicola soli KIS12-7 is a bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1542726
  • Matching level: species

strain history

  • @ref: 22093
  • history: <- S.-W. Kwon, KACC; KIS12-7

doi: 10.13145/bacdive130417.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Gryllotalpicola
  • species: Gryllotalpicola soli
  • full scientific name: Gryllotalpicola soli Moon et al. 2014

@ref: 22093

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Gryllotalpicola

species: Gryllotalpicola soli

full scientific name: Gryllotalpicola soli Moon et al. 2014

strain designation: KIS12-7

type strain: yes

Morphology

colony morphology

  • @ref: 22093
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

  • @ref: 22093
  • name: GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1484
  • composition: Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water

culture temp

  • @ref: 22093
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 22093
  • sample type: soil
  • geographic location: Ongjin County, Daecheong-Island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_90433.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_32018;97_40543;98_53642;99_90433&stattab=map
  • Last taxonomy: Gryllotalpicola
  • 16S sequence: KJ948113
  • Sequence Identity:
  • Total samples: 269
  • soil counts: 103
  • aquatic counts: 25
  • animal counts: 59
  • plant counts: 82

Safety information

risk assessment

  • @ref: 22093
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22093
  • description: Gryllotalpicola soli strain KIS12-7 16S ribosomal RNA gene, partial sequence
  • accession: KJ948113
  • length: 1455
  • database: nuccore
  • NCBI tax ID: 1542726

GC content

  • @ref: 22093
  • GC-content: 72.1
  • method: fluorimetric

External links

@ref: 22093

culture collection no.: DSM 27182, KACC 17302, NBRC 109659

straininfo link

  • @ref: 88949
  • straininfo: 405508

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25240021Gryllotalpicola soli sp. nov., isolated from soil.Moon JY, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Yoon JH, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.067710-02014Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics
Phylogeny31675290Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli.Cho H, Heo J, Hamada M, Tamura T, Saitou S, Kim JS, Hong SB, Kim SJ, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0037672020Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22093Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27182Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27182)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88949Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405508.1