Strain identifier
BacDive ID: 130417
Type strain:
Species: Gryllotalpicola soli
Strain Designation: KIS12-7
Strain history: <- S.-W. Kwon, KACC; KIS12-7
NCBI tax ID(s): 1542726 (species)
version 8.1 (current version)
General
@ref: 22093
BacDive-ID: 130417
DSM-Number: 27182
keywords: 16S sequence, Bacteria, mesophilic
description: Gryllotalpicola soli KIS12-7 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1542726
- Matching level: species
strain history
- @ref: 22093
- history: <- S.-W. Kwon, KACC; KIS12-7
doi: 10.13145/bacdive130417.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Gryllotalpicola
- species: Gryllotalpicola soli
- full scientific name: Gryllotalpicola soli Moon et al. 2014
@ref: 22093
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Gryllotalpicola
species: Gryllotalpicola soli
full scientific name: Gryllotalpicola soli Moon et al. 2014
strain designation: KIS12-7
type strain: yes
Morphology
colony morphology
- @ref: 22093
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 22093
- name: GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1484
- composition: Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water
culture temp
- @ref: 22093
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22093
- sample type: soil
- geographic location: Ongjin County, Daecheong-Island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_90433.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_32018;97_40543;98_53642;99_90433&stattab=map
- Last taxonomy: Gryllotalpicola
- 16S sequence: KJ948113
- Sequence Identity:
- Total samples: 269
- soil counts: 103
- aquatic counts: 25
- animal counts: 59
- plant counts: 82
Safety information
risk assessment
- @ref: 22093
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22093
- description: Gryllotalpicola soli strain KIS12-7 16S ribosomal RNA gene, partial sequence
- accession: KJ948113
- length: 1455
- database: ena
- NCBI tax ID: 1542726
GC content
- @ref: 22093
- GC-content: 72.1
- method: fluorimetric
External links
@ref: 22093
culture collection no.: DSM 27182, KACC 17302, NBRC 109659
straininfo link
- @ref: 88949
- straininfo: 405508
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25240021 | Gryllotalpicola soli sp. nov., isolated from soil. | Moon JY, Kim SJ, Hamada M, Ahn JH, Weon HY, Suzuki KI, Yoon JH, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.067710-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
Phylogeny | 31675290 | Gryllotalpicola protaetiae sp. nov., isolated from insect Protaetia brevitarsis seulensis, and emended descriptions of the genus Gryllotalpicola and the species Gryllotalpicola soli. | Cho H, Heo J, Hamada M, Tamura T, Saitou S, Kim JS, Hong SB, Kim SJ, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003767 | 2020 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22093 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27182 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27182) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88949 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405508.1 |