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Strain identifier

BacDive ID: 130416

Type strain: Yes

Species: Labedella endophytica

Strain history: <- Wenjun Li, EGI 6500705

NCBI tax ID(s): 1523160 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22059

BacDive-ID: 130416

DSM-Number: 28746

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Labedella endophytica DSM 28746 is an aerobe, mesophilic bacterium that was isolated from stem of a healthy halophyte sample of Anabasis eliator Schischk.

NCBI tax id

  • NCBI tax id: 1523160
  • Matching level: species

strain history

doi: 10.13145/bacdive130416.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Labedella
  • species: Labedella endophytica
  • full scientific name: Labedella endophytica Wang et al. 2015

@ref: 22059

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Labedella

species: Labedella endophytica

full scientific name: Labedella endophytica Wang et al. 2015

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 95.364

Culture and growth conditions

culture medium

  • @ref: 22059
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22059positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.921

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 92.391

observation

  • @ref: 67770
  • observation: quinones: MK-9, MK-10, MK-11

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
22059stem of a healthy halophyte sample of Anabasis eliator (C. A. Mey.) SchischkAnabasis elatiorXinjiang Province, UrumqiChinaCHNAsia
67770Stem of a healthy halophyte Anabasis elatior (C. A. Mey.) SchischkAnabasis elatiorsuburban district of Urumqi, Xinjiang Province, north-west ChinaChinaCHNAsia
67771PlantChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Stem (Branch)

Safety information

risk assessment

  • @ref: 22059
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22059
  • description: Labedella endophytica strain EGI 6500705 16S ribosomal RNA gene, partial sequence
  • accession: KM095501
  • length: 1542
  • database: ena
  • NCBI tax ID: 1523160

Genome sequences

  • @ref: 67770
  • description: Labedella endophytica EGI 6500705
  • accession: GCA_003990045
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1523160

GC content

  • @ref: 22059
  • GC-content: 69.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22059

culture collection no.: DSM 28746, CPCC 203961, JCM 30092, KCTC 29494, EGI 6500705

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25331338Labedella endophytica sp. nov., a novel endophytic actinobacterium isolated from stem of Anabasis elatior (C. A. Mey.) Schischk.Wang HF, Zhang YG, Cheng J, Hozzein WN, Liu WH, Li L, Chen JY, Guo JW, Zhang YM, Li WJAntonie Van Leeuwenhoek10.1007/s10482-014-0307-02014Actinobacteria/*classification/*isolation & purification, Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/*classification/*isolation & purification, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Ornithine/analysis, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisEnzymology
Phylogeny31402073Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CHSyst Appl Microbiol10.1016/j.syapm.2019.1260042019Actinobacteria/chemistry/*classification/genetics, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22059Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28746Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28746)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes