Strain identifier
BacDive ID: 130416
Type strain: 
Species: Labedella endophytica
Strain history: <- Wenjun Li, EGI 6500705
NCBI tax ID(s): 1523160 (species)
version 8.1 (current version)
General
@ref: 22059
BacDive-ID: 130416
DSM-Number: 28746
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Labedella endophytica DSM 28746 is an aerobe, mesophilic bacterium that was isolated from stem of a healthy halophyte sample of Anabasis eliator Schischk.
NCBI tax id
- NCBI tax id: 1523160
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22059 | <- W.-J. Li, YIM; EGI 6500705 <- H. Wang, CAS, Xinjiang Inst. of Ecology and Geography |
| 67770 | W.-J. Li EGI 6500705. |
| 67771 | <- Wenjun Li, EGI 6500705 |
doi: 10.13145/bacdive130416.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Labedella
- species: Labedella endophytica
- full scientific name: Labedella endophytica Wang et al. 2015
@ref: 22059
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Labedella
species: Labedella endophytica
full scientific name: Labedella endophytica Wang et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22059
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22059 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-9, MK-10, MK-11
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 22059 | stem of a healthy halophyte sample of Anabasis eliator (C. A. Mey.) Schischk | Anabasis elatior | Xinjiang Province, Urumqi | China | CHN | Asia |
| 67770 | Stem of a healthy halophyte Anabasis elatior (C. A. Mey.) Schischk | Anabasis elatior | suburban district of Urumqi, Xinjiang Province, north-west China | China | CHN | Asia |
| 67771 | Plant | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Stem (Branch) |
Safety information
risk assessment
- @ref: 22059
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22059
- description: Labedella endophytica strain EGI 6500705 16S ribosomal RNA gene, partial sequence
- accession: KM095501
- length: 1542
- database: ena
- NCBI tax ID: 1523160
Genome sequences
- @ref: 67770
- description: Labedella endophytica EGI 6500705
- accession: GCA_003990045
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1523160
GC content
- @ref: 22059
- GC-content: 69.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.059 | no |
| flagellated | no | 96.923 | no |
| gram-positive | yes | 92.225 | no |
| anaerobic | no | 99.291 | yes |
| aerobic | yes | 92.119 | yes |
| halophile | no | 90.547 | no |
| spore-forming | no | 91.123 | no |
| thermophile | no | 99.722 | no |
| glucose-util | yes | 87.55 | no |
| glucose-ferment | no | 87.616 | no |
External links
@ref: 22059
culture collection no.: DSM 28746, CPCC 203961, JCM 30092, KCTC 29494, EGI 6500705
straininfo link
- @ref: 88948
- straininfo: 401638
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25331338 | Labedella endophytica sp. nov., a novel endophytic actinobacterium isolated from stem of Anabasis elatior (C. A. Mey.) Schischk. | Wang HF, Zhang YG, Cheng J, Hozzein WN, Liu WH, Li L, Chen JY, Guo JW, Zhang YM, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0307-0 | 2014 | Actinobacteria/*classification/*isolation & purification, Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/*classification/*isolation & purification, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Ornithine/analysis, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis | Enzymology |
| Phylogeny | 31402073 | Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella. | Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH | Syst Appl Microbiol | 10.1016/j.syapm.2019.126004 | 2019 | Actinobacteria/chemistry/*classification/genetics, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22059 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28746 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28746) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 88948 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401638.1 |