General

@ref: 21665

BacDive-ID: 130412

DSM-Number: 27099

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Microbacterium endophyticum PA15 is a mesophilic bacterium that was isolated from surface sterilized roots and aerial parts of sea purslane , a salt-marsh halophyte.

NCBI tax id

• NCBI tax id: 1526412
• Matching level: species

strain history

• @ref: 21665
• history: <- A. Alves, Univ. de Aveiro, Dep. de Biologie, Portugal; PA15

doi: 10.13145/bacdive130412.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Microbacteriaceae
• genus: Microbacterium
• species: Microbacterium endophyticum
• full scientific name: Microbacterium endophyticum Alves et al. 2015

@ref: 21665

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium endophyticum

full scientific name: Microbacterium endophyticum Alves et al. 2015

strain designation: PA15

type strain: yes

Morphology

cell morphology

Culture and growth conditions

culture medium

• @ref: 21665
• name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
• growth: yes
• link: https://mediadive.dsmz.de/medium/92
• composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

• @ref: 21665
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 21665
• sample type: surface sterilized roots and aerial parts of sea purslane (Halimione portulacoides), a salt-marsh halophyte
• host species: Halimione portulacoides
• geographic location: Murtosa, Largo do Laranjo, Ria de Aveiro (40°43'48.0''N 8°36'45.5''W)
• country: Portugal
• origin.country: PRT
• continent: Europe
• latitude: 40.73
• longitude: -8.6126

isolation source categories

Safety information

risk assessment

• @ref: 21665
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 21665
• description: Microbacterium endophyticum strain PA15 16S ribosomal RNA gene, partial sequence
• accession: KJ920264
• length: 1438
• database: ena
• NCBI tax ID: 1526412

Genome sequences

Genome-based predictions

predictions

External links

@ref: 21665

culture collection no.: DSM 27099, CECT 8354

straininfo link

• @ref: 88944
• straininfo: 395114

literature

• topic: Phylogeny
• Pubmed-ID: 25239238
• title: Microbacterium endophyticum sp. nov. and Microbacterium halimionae sp. nov., endophytes isolated from the salt-marsh plant Halimione portulacoides and emended description of the genus Microbacterium.
• authors: Alves A, Correia A, Igual JM, Trujillo ME
• journal: Syst Appl Microbiol
• DOI: 10.1016/j.syapm.2014.08.004
• year: 2014
• mesh: Actinobacteria/*classification/genetics/*isolation & purification, Amaranthaceae/*microbiology, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Molecular Typing, Nucleic Acid Hybridization, Ornithine/analysis, Peptidoglycan/analysis, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Vitamin K 2/analysis
• topic2: Enzymology

Reference