Strain identifier
BacDive ID: 130411
Type strain: 
Species: Microbacterium mangrovi
Strain history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 115
NCBI tax ID(s): 1348253 (species)
version 8.1 (current version)
General
@ref: 21664
BacDive-ID: 130411
DSM-Number: 28240
keywords: 16S sequence, Bacteria, mesophilic
description: Microbacterium mangrovi DSM 28240 is a mesophilic bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 1348253
- Matching level: species
strain history
- @ref: 21664
- history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 115
doi: 10.13145/bacdive130411.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium mangrovi
- full scientific name: Microbacterium mangrovi Lee et al. 2014
@ref: 21664
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium mangrovi
full scientific name: Microbacterium mangrovi Lee et al. 2014 emend. Nouioui et al. 2018
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21664
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 21664
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21664
- sample type: mangrove soil
- geographic location: state of Pahang, Tanjung Lumpur mangrove forest
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_6792.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_417;97_3932;98_5006;99_6792&stattab=map
- Last taxonomy: Microbacterium mangrovi
- 16S sequence: KF028598
- Sequence Identity:
- Total samples: 451
- soil counts: 147
- aquatic counts: 15
- animal counts: 55
- plant counts: 234
Safety information
risk assessment
- @ref: 21664
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21664
- description: Microbacterium mangrovi strain MUSC 115 16S ribosomal RNA gene, partial sequence
- accession: KF028598
- length: 1484
- database: ena
- NCBI tax ID: 1348253
GC content
- @ref: 21664
- GC-content: 70.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21664
culture collection no.: DSM 28240, MCCC 1K00251, NBRC 110089, MUSC 115
straininfo link
- @ref: 88943
- straininfo: 404046
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25056298 | Microbacterium mangrovi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. | Lee LH, Azman AS, Zainal N, Eng SK, Mutalib NA, Yin WF, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.062414-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Glycolipids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
| Phylogeny | 27688210 | Microbacterium rhizosphaerae sp. nov., isolated from a Ginseng field, South Korea. | Cho SJ, Lee SS | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0768-4 | 2016 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Panax/*growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology | Metabolism |
| 28611495 | Antibacterial, Anticancer and Neuroprotective Activities of Rare Actinobacteria from Mangrove Forest Soils. | Azman AS, Othman I, Fang CM, Chan KG, Goh BH, Lee LH | Indian J Microbiol | 10.1007/s12088-016-0627-z | 2016 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21664 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28240 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28240) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88943 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404046.1 |