Strain identifier

BacDive ID: 130392

Type strain: Yes

Species: Listeria newyorkensis

Strain history: CIP <- 2016, DSMZ <- M. Wiedmann, Cornell Univ., Ithaca, USA: strain FSL M6-0635 <- T. Malley

NCBI tax ID(s): 1497681 (species)

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General

@ref: 21632

BacDive-ID: 130392

DSM-Number: 28861

keywords: Bacteria, mesophilic, Gram-positive, rod-shaped

description: Listeria newyorkensis DSM 28861 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from non-food-contact surface in a seafood processing plant.

NCBI tax id

  • NCBI tax id: 1497681
  • Matching level: species

strain history

@refhistory
21632<- M. Wiedmann, Cornell Univ., Ithaca, USA; FSL M6-0635 <- T. Malley
121285CIP <- 2016, DSMZ <- M. Wiedmann, Cornell Univ., Ithaca, USA: strain FSL M6-0635 <- T. Malley

doi: 10.13145/bacdive130392.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria newyorkensis
  • full scientific name: Listeria newyorkensis Weller et al. 2015

@ref: 21632

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria newyorkensis

full scientific name: Listeria newyorkensis Weller et al. 2015

type strain: yes

Morphology

cell morphology

  • @ref: 121285
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 21632
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41621MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
21632BHI MEDIUM (DSMZ Medium 215)yesName: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/215
21632COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
121285CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
41621positivegrowth30mesophilic
21632positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683764853esculin+hydrolysis
6837618333D-arabitol+builds acid from
6837665327D-xylose+builds acid from
6837662345L-rhamnose+builds acid from
68376320061methyl alpha-D-glucopyranoside+builds acid from
6837616988D-ribose+builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from

enzymes

@refvalueactivityec
21632catalase+1.11.1.6
21632cytochrome-c oxidase-1.9.3.1
68376beta-glucosidase+3.2.1.21

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
21632-+++++++--
21632-++/-+++++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21632non-food-contact surface in a seafood processing plantNew York StateUSAUSANorth America
121285Environment, Non-food-contact surface in a seafood processing plantNew York, New-York StateUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Engineered#Industrial#Plant (Factory)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
216321Risk group (German classification)
1212851Risk group (French classification)

Sequence information

GC content

  • @ref: 21632
  • GC-content: 45.2
  • method: sequence analysis

External links

@ref: 21632

culture collection no.: DSM 28861, CIP 111021, LMG 28310, FSL M6-0635

straininfo link

  • @ref: 88924
  • straininfo: 394240

literature

  • topic: Phylogeny
  • Pubmed-ID: 25342111
  • title: Listeria booriae sp. nov. and Listeria newyorkensis sp. nov., from food processing environments in the USA.
  • authors: Weller D, Andrus A, Wiedmann M, den Bakker HC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.070839-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Dairying, *Food Microbiology, Food-Processing Industry, Genes, Bacterial, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, New England, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21632Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28861Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28861)
41621Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34633
68376Automatically annotated from API LIST
88924Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID394240.1
121285Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111021Collection of Institut Pasteur (CIP 111021)