Strain identifier

BacDive ID: 130389

Type strain: Yes

Species: Listeria riparia

Strain history: <- M. Wiedmann, Dept. Food Science, Cornell Univ., Ithaca, USA; FSL S10-1204 <- L. Strawn

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21629

BacDive-ID: 130389

DSM-Number: 26685

keywords: 16S sequence, Bacteria, mesophilic

description: Listeria riparia DSM 26685 is a mesophilic bacterium that was isolated from running water.

NCBI tax id

NCBI tax idMatching level
1494964species
1265816strain

strain history

  • @ref: 21629
  • history: <- M. Wiedmann, Dept. Food Science, Cornell Univ., Ithaca, USA; FSL S10-1204 <- L. Strawn

doi: 10.13145/bacdive130389.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria riparia
  • full scientific name: Listeria riparia Den Bakker et al. 2014

@ref: 21629

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria riparia

full scientific name: Listeria riparia den Bakker et al. 2014

type strain: yes

Morphology

colony morphology

  • @ref: 21629
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 21629
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/215
  • composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

  • @ref: 21629
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683764853esculin+hydrolysis
6837665327D-xylose+builds acid from
6837662345L-rhamnose+builds acid from
68376320061methyl alpha-D-glucopyranoside+builds acid from
6837616988D-ribose-builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from

enzymes

@refvalueactivityec
21629catalase+1.11.1.6
21629cytochrome-c oxidase-1.9.3.1
68376beta-glucosidase+3.2.1.21

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
21629+/-++/-++++---
21629-+-+/-+++---

Isolation, sampling and environmental information

isolation

  • @ref: 21629
  • sample type: running water
  • geographic location: Florida
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 21629
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21629
  • description: Listeria riparia FSL S10-1204 16S ribosomal RNA gene, partial sequence
  • accession: JX961638
  • length: 1429
  • database: ena
  • NCBI tax ID: 1265816

GC content

  • @ref: 21629
  • GC-content: 41.9
  • method: sequence analysis

External links

@ref: 21629

culture collection no.: DSM 26685, LMG 28119, BEI NR-42634, FSL S10-1204

straininfo link

  • @ref: 88921
  • straininfo: 391761

literature

  • topic: Phylogeny
  • Pubmed-ID: 24599893
  • title: Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments.
  • authors: den Bakker HC, Warchocki S, Wright EM, Allred AF, Ahlstrom C, Manuel CS, Stasiewicz MJ, Burrell A, Roof S, Strawn LK, Fortes E, Nightingale KK, Kephart D, Wiedmann M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.052720-0
  • year: 2014
  • mesh: Agriculture, Bacterial Typing Techniques, Colorado, DNA, Bacterial/genetics, Florida, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21629Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26685Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26685)
68376Automatically annotated from API LIST
88921Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID391761.1