Strain identifier
BacDive ID: 130389
Type strain:
Species: Listeria riparia
Strain history: <- M. Wiedmann, Dept. Food Science, Cornell Univ., Ithaca, USA; FSL S10-1204 <- L. Strawn
NCBI tax ID(s): 1265816 (strain), 1494964 (species)
General
@ref: 21629
BacDive-ID: 130389
DSM-Number: 26685
keywords: 16S sequence, Bacteria, mesophilic
description: Listeria riparia DSM 26685 is a mesophilic bacterium that was isolated from running water.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1494964 | species |
1265816 | strain |
strain history
- @ref: 21629
- history: <- M. Wiedmann, Dept. Food Science, Cornell Univ., Ithaca, USA; FSL S10-1204 <- L. Strawn
doi: 10.13145/bacdive130389.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Listeriaceae
- genus: Listeria
- species: Listeria riparia
- full scientific name: Listeria riparia Den Bakker et al. 2014
@ref: 21629
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Listeriaceae
genus: Listeria
species: Listeria riparia
full scientific name: Listeria riparia den Bakker et al. 2014
type strain: yes
Morphology
colony morphology
- @ref: 21629
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 21629
- name: BHI MEDIUM (DSMZ Medium 215)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215
- composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
culture temp
- @ref: 21629
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68376 | 4853 | esculin | + | hydrolysis |
68376 | 65327 | D-xylose | + | builds acid from |
68376 | 62345 | L-rhamnose | + | builds acid from |
68376 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68376 | 16988 | D-ribose | - | builds acid from |
68376 | 29042 | glucose 1-phosphate | - | builds acid from |
68376 | 16443 | D-tagatose | - | builds acid from |
enzymes
@ref | value | activity | ec |
---|---|---|---|
21629 | catalase | + | 1.11.1.6 |
21629 | cytochrome-c oxidase | - | 1.9.3.1 |
68376 | beta-glucosidase | + | 3.2.1.21 |
API LIST
@ref | DIM | ESC | alpha MAN | DARL | XYL | RHA | MDG | RIB | G1P | TAG |
---|---|---|---|---|---|---|---|---|---|---|
21629 | +/- | + | +/- | + | + | + | + | - | - | - |
21629 | - | + | - | +/- | + | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 21629
- sample type: running water
- geographic location: Florida
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
Safety information
risk assessment
- @ref: 21629
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21629
- description: Listeria riparia FSL S10-1204 16S ribosomal RNA gene, partial sequence
- accession: JX961638
- length: 1429
- database: ena
- NCBI tax ID: 1265816
GC content
- @ref: 21629
- GC-content: 41.9
- method: sequence analysis
External links
@ref: 21629
culture collection no.: DSM 26685, LMG 28119, BEI NR-42634, FSL S10-1204
straininfo link
- @ref: 88921
- straininfo: 391761
literature
- topic: Phylogeny
- Pubmed-ID: 24599893
- title: Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments.
- authors: den Bakker HC, Warchocki S, Wright EM, Allred AF, Ahlstrom C, Manuel CS, Stasiewicz MJ, Burrell A, Roof S, Strawn LK, Fortes E, Nightingale KK, Kephart D, Wiedmann M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.052720-0
- year: 2014
- mesh: Agriculture, Bacterial Typing Techniques, Colorado, DNA, Bacterial/genetics, Florida, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21629 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26685 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26685) | |
68376 | Automatically annotated from API LIST | |||
88921 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391761.1 |