Strain identifier

BacDive ID: 130359

Type strain: Yes

Species: Anaerostipes rhamnosivorans

Strain Designation: 1y-2

Culture col. no.: DSM 26241, KCTC 15316

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21475

BacDive-ID: 130359

DSM-Number: 26241

keywords: Bacteria, 16S sequence, genome sequence, obligate anaerobe, mesophilic

description: Anaerostipes rhamnosivorans 1y-2 is an obligate anaerobe, mesophilic bacterium that was isolated from stool of a 1-year-old healthy infant.

strain history: <- N. Bui, Wageningen University; 1y-2

doi: 10.13145/bacdive130359.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Anaerostipes
  • species: Anaerostipes rhamnosivorans
  • full scientific name: Anaerostipes rhamnosivorans Bui et al. 2014

@ref: 21475

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Anaerostipes

species: Anaerostipes rhamnosivorans

full scientific name: Anaerostipes rhamnosivorans Bui et al. 2014

strain designation: 1y-2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21475
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104), strictly anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104.pdf

culture temp

  • @ref: 21475
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21475
  • oxygen tolerance: obligate anaerobe

compound production

  • @ref: 21475
  • compound: butyrate

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
21475-----------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 21475
  • sample type: stool of a 1-year-old healthy infant
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Child
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 21475
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21475
  • description: Anaerostipes rhamnosivorans strain 1y-2 from Netherlands 16S ribosomal RNA gene, partial sequence
  • accession: JX273468
  • length: 1382
  • database: ena
  • NCBI tax ID: 1229621

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerostipes rhamnosivorans 1y2GCA_005280655completencbi1229621
66792Anaerostipes rhamnosivorans strain 1y21229621.4completepatric1229621

GC content

  • @ref: 21475
  • GC-content: 44.5
  • method: sequence analysis

External links

@ref: 21475

culture collection no.: DSM 26241, KCTC 15316

straininfo link

@refpassport
20218http://www.straininfo.net/strains/894475
20218http://www.straininfo.net/strains/894476

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21475Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26241Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26241)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes