Strain identifier
BacDive ID: 130346
Type strain: 
Species: Endozoicomonas atrinae
Strain Designation: WP70
Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; WP70.
NCBI tax ID(s): 1333660 (species)
version 8.1 (current version)
General
@ref: 22052
BacDive-ID: 130346
DSM-Number: 100061
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Endozoicomonas atrinae WP70 is a mesophilic bacterium that was isolated from intestinal tract of a comb pen shell Atrina pectinata.
NCBI tax id
- NCBI tax id: 1333660
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22052 | <- KACC <- D.-W. Hyun, Dept. Biology, Kyung Hee Univ., Seoul, Republic of Korea |
| 67770 | J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; WP70. |
doi: 10.13145/bacdive130346.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Endozoicomonadaceae
- genus: Endozoicomonas
- species: Endozoicomonas atrinae
- full scientific name: Endozoicomonas atrinae Hyun et al. 2014
@ref: 22052
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Endozoicomonadaceae
genus: Endozoicomonas
species: Endozoicomonas atrinae
full scientific name: Endozoicomonas atrinae Hyun et al. 2014
strain designation: WP70
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22052
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22052 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 22052 | intestinal tract of a comb pen shell Atrina pectinata | Atrina pectinata | southern sea of Yeosu | Republic of Korea | KOR | Asia |
| 67770 | Intestinal trct of a comb pen shel, Atrina pectinata | Atrina pectinata | southern sea of Yeosu in Korea |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Invertebrates (Other) | #Mollusca |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_102956.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_202;96_2395;97_10802;98_70220;99_102956&stattab=map
- Last taxonomy: Endozoicomonas atrinae
- 16S sequence: KC878324
- Sequence Identity:
- Total samples: 1109
- soil counts: 34
- aquatic counts: 958
- animal counts: 116
- plant counts: 1
Safety information
risk assessment
- @ref: 22052
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22052
- description: Endozoicomonas atrinae strain WP70 16S ribosomal RNA gene, partial sequence
- accession: KC878324
- length: 1465
- database: ena
- NCBI tax ID: 1333660
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Endozoicomonas atrinae WP70 | 2775507270 | complete | img | 1333660 |
| 67770 | Endozoicomonas atrinae WP70 | GCA_001647025 | scaffold | ncbi | 1333660 |
GC content
- @ref: 22052
- GC-content: 50.5
External links
@ref: 22052
culture collection no.: DSM 100061, JCM 19190, KACC 17474
straininfo link
- @ref: 88878
- straininfo: 407598
literature
- topic: Phylogeny
- Pubmed-ID: 24733175
- title: Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata.
- authors: Hyun DW, Shin NR, Kim MS, Oh SJ, Kim PS, Whon TW, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.060780-0
- year: 2014
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Gastrointestinal Tract/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22052 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100061 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100061) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88878 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407598.1 |