Strain identifier

BacDive ID: 130341

Type strain: No

Species: Geodermatophilus sp.

Strain Designation: AA-682

Strain history: <- P. Hirsch, Univ. Kiel; AA-682

NCBI tax ID(s): 52020 (species)

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General

@ref: 21599

BacDive-ID: 130341

DSM-Number: 44400

keywords: genome sequence, Bacteria, psychrophilic, Gram-positive

description: Geodermatophilus sp. AA-682 is a psychrophilic, Gram-positive bacterium that was isolated from yellow mineral powder in sphaerical sandstone concretion found on Linnaeus Terrace.

NCBI tax id

  • NCBI tax id: 52020
  • Matching level: species

strain history

  • @ref: 21599
  • history: <- P. Hirsch, Univ. Kiel; AA-682

doi: 10.13145/bacdive130341.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Geodermatophilus
  • species: Geodermatophilus sp.
  • full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Pleomorpha
    20215Petropleomorpha

@ref: 21599

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Geodermatophilus

species: Geodermatophilus sp.

full scientific name: Geodermatophilus sp.

strain designation: AA-682

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_44400_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44400_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44400_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44400_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44400_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 21599
  • name: PYGV AGAR (DSMZ Medium 621)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/621
  • composition: Name: PYGV AGAR (DSMZ Medium 621) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l CaCl2 x 2 H2O 0.0703158 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water

culture temp

  • @ref: 21599
  • growth: positive
  • type: growth
  • temperature: 15
  • range: psychrophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.874

Isolation, sampling and environmental information

isolation

  • @ref: 21599
  • sample type: yellow mineral powder in sphaerical sandstone concretion found on Linnaeus Terrace
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Modestobacter sp. DSM 44400GCA_900107175scaffoldncbi1550230
66792Modestobacter sp. DSM 444001550230.4wgspatric1550230
66792Modestobacter sp. DSM 444002599185197draftimg1550230

GC content

  • @ref: 21599
  • GC-content: 69.6
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes71no
motileyes69.862no
glucose-fermentno90.769no
flagellatedno90.969no
gram-positiveyes89.654no
anaerobicno98.016no
aerobicyes91.401no
halophileno93.441no
spore-formingno64.882no
thermophileno96.768yes
glucose-utilyes87.739no

External links

@ref: 21599

culture collection no.: DSM 44400, IFAM AA-682

straininfo link

  • @ref: 88873
  • straininfo: 401249

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21599Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-44400Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44400)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66793Mukherjee et al.GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life10.1038/nbt.3886 35: 676-683 201728604660
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88873Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401249.1