Strain identifier
BacDive ID: 130329
Type strain: 
Species: Winogradskyella jejuensis
Strain Designation: CP32
Strain history: J.-Y. Kim CP32.
NCBI tax ID(s): 1089305 (species)
version 8.1 (current version)
General
@ref: 21866
BacDive-ID: 130329
DSM-Number: 25330
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Winogradskyella jejuensis CP32 is a mesophilic bacterium that was isolated from brown alga Carpopeltis affinis.
NCBI tax id
- NCBI tax id: 1089305
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21866 | <- J. Y. Kim, Jeju National Univ., Rep. of Korea; CP32 |
| 67770 | J.-Y. Kim CP32. |
doi: 10.13145/bacdive130329.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Winogradskyella
- species: Winogradskyella jejuensis
- full scientific name: Winogradskyella jejuensis Kim and Oh 2015
@ref: 21866
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Winogradskyella
species: Winogradskyella jejuensis
full scientific name: Winogradskyella jejuensis Kim and Oh 2015
strain designation: CP32
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21866
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21866 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 21866 | brown alga Carpopeltis affinis | Carpopeltis affinis | coast of Jeju Island | Republic of Korea | KOR | Asia |
| 67770 | Brown alga Carpopeltis affinis collected along coast of Jeju Island | Carpopeltis affinis | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Brown Algae
taxonmaps
- @ref: 69479
- File name: preview.99_3201.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_1666;97_1994;98_2454;99_3201&stattab=map
- Last taxonomy: Winogradskyella jejuensis
- 16S sequence: JF820844
- Sequence Identity:
- Total samples: 442
- soil counts: 11
- aquatic counts: 408
- animal counts: 8
- plant counts: 15
Safety information
risk assessment
- @ref: 21866
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21866
- description: Winogradskyella jejuensis strain CP32 16S ribosomal RNA gene, partial sequence
- accession: JF820844
- length: 1441
- database: ena
- NCBI tax ID: 1089305
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Winogradskyella jejuensis strain DSM 25330 | 1089305.3 | wgs | patric | 1089305 |
| 66792 | Winogradskyella jejuensis DSM 25330 | 2695420983 | draft | img | 1089305 |
| 67770 | Winogradskyella jejuensis DSM 25330 | GCA_900129745 | contig | ncbi | 1089305 |
GC content
- @ref: 21866
- GC-content: 33.3
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.622 | no |
| flagellated | no | 95.867 | no |
| gram-positive | no | 98.581 | no |
| anaerobic | no | 98.963 | no |
| aerobic | yes | 83.87 | no |
| halophile | no | 73.994 | no |
| spore-forming | no | 96.204 | no |
| glucose-util | yes | 84.997 | no |
| thermophile | no | 97.637 | yes |
| glucose-ferment | no | 92.783 | no |
External links
@ref: 21866
culture collection no.: DSM 25330, JCM 18454, KCTC 23835
straininfo link
- @ref: 88862
- straininfo: 407066
literature
- topic: Phylogeny
- Pubmed-ID: 23124762
- title: Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis.
- authors: Kim JY, Oh DC
- journal: J Microbiol
- DOI: 10.1007/s12275-012-2447-0
- year: 2012
- mesh: Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phaeophyta/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21866 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25330 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25330) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88862 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407066.1 |