Strain identifier
BacDive ID: 130328
Type strain: 
Species: Psychroflexus salarius
Strain history: K. Y. Jahng MIC1008.
NCBI tax ID(s): 1155689 (species)
version 8.1 (current version)
General
@ref: 21747
BacDive-ID: 130328
DSM-Number: 25661
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Psychroflexus salarius DSM 25661 is a mesophilic, Gram-negative bacterium that was isolated from brine from a salt pond.
NCBI tax id
- NCBI tax id: 1155689
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21747 | <- J. Chun, Chonbuk National Univ., Dept. of Life Scs., Jeonju-si, Korea; MIC1008 |
| 67770 | K. Y. Jahng MIC1008. |
doi: 10.13145/bacdive130328.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Psychroflexus
- species: Psychroflexus salarius
- full scientific name: Psychroflexus salarius Chun et al. 2014
@ref: 21747
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Psychroflexus
species: Psychroflexus salarius
full scientific name: Psychroflexus salarius Chun et al. 2014
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.995
Culture and growth conditions
culture medium
- @ref: 21747
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21747 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21747 | brine from a salt pond | Jeollabuk-do, Buan-gun, Gomso salt pan | Republic of Korea | KOR | Asia |
| 67770 | Gomso salt pan in Buan County | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Pond (small) |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_4562.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_423;96_2276;97_2759;98_3427;99_4562&stattab=map
- Last taxonomy: Psychroflexus salarius subclade
- 16S sequence: JQ390292
- Sequence Identity:
- Total samples: 1165
- soil counts: 96
- aquatic counts: 1014
- animal counts: 46
- plant counts: 9
Safety information
risk assessment
- @ref: 21747
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21747
- description: Psychroflexus salarius strain MIC1008 16S ribosomal RNA gene, partial sequence
- accession: JQ390292
- length: 1379
- database: ena
- NCBI tax ID: 1155689
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Psychroflexus salarius strain DSM 25661 | 1155689.4 | wgs | patric | 1155689 |
| 66792 | Psychroflexus salarius DSM 25661 | 2695420935 | draft | img | 1155689 |
| 67770 | Psychroflexus salarius DSM 25661 | GCA_900129035 | scaffold | ncbi | 1155689 |
GC content
- @ref: 21747
- GC-content: 32.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 87.432 | no |
| gram-positive | no | 98.271 | no |
| anaerobic | no | 98.378 | no |
| aerobic | yes | 89.793 | no |
| halophile | yes | 77.498 | no |
| spore-forming | no | 96.389 | no |
| flagellated | no | 95.289 | no |
| thermophile | no | 98.311 | yes |
| glucose-util | yes | 84.079 | no |
| glucose-ferment | no | 89.31 | no |
External links
@ref: 21747
culture collection no.: DSM 25661, KACC 17063, MIC 1008, JCM 18730
straininfo link
- @ref: 88861
- straininfo: 399578
literature
- topic: Phylogeny
- Pubmed-ID: 25048209
- title: Psychroflexus salarius sp. nov., isolated from Gomso salt pan.
- authors: Chun J, Kang JY, Jahng KY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.065219-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21747 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25661 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25661) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88861 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399578.1 |