Strain identifier

BacDive ID: 130326

Type strain: Yes

Species: Aquimarina pacifica

Strain Designation: SW150

Strain history: X.-H. Zhang SW150.

NCBI tax ID(s): 1296415 (species)

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General

@ref: 21596

BacDive-ID: 130326

DSM-Number: 25593

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aquimarina pacifica SW150 is a mesophilic bacterium that was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1296415
  • Matching level: species

strain history

@refhistory
21596<- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; sw150
67770X.-H. Zhang SW150.

doi: 10.13145/bacdive130326.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina pacifica
  • full scientific name: Aquimarina pacifica Zhang et al. 2014

@ref: 21596

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina pacifica

full scientific name: Aquimarina pacifica Zhang et al. 2014

strain designation: SW150

type strain: yes

Morphology

colony morphology

  • @ref: 21596
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 21596
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21596positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationlatitudelongitude
21596surface seawaterSouth Pacific Gyre at station U1369 (39° 19' S 139° 48' W)-39.3167-139.8
67770Surface seawater in the South Pacific Gyre (39° 19' S 139° 48' W)-39.3167-139.8

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_7456.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_2356;98_5464;99_7456&stattab=map
  • Last taxonomy: Aquimarina pacifica subclade
  • 16S sequence: KC476291
  • Sequence Identity:
  • Total samples: 94
  • soil counts: 1
  • aquatic counts: 58
  • animal counts: 34
  • plant counts: 1

Safety information

risk assessment

  • @ref: 21596
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21596Aquimarina pacifica strain SW150 16S ribosomal RNA gene, partial sequenceKC4762911483ena1296415
67770Aquimarina sp. U1369-101122-SW150 16S ribosomal RNA gene, partial sequenceJQ0821391428ena1171528

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquimarina pacifica SW1502579778789draftimg1296415
67770Aquimarina pacifica SW150GCA_000520955contigncbi1296415

GC content

  • @ref: 21596
  • GC-content: 33.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21596

culture collection no.: DSM 25593, CGMCC 1.12180, JCM 18214

straininfo link

  • @ref: 88859
  • straininfo: 402535

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24626966Aquimarina pacifica sp. nov., isolated from seawater.Zhang Z, Yu T, Xu T, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.062695-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27259860Aquimarina aggregata sp. nov., isolated from seawater.Wang Y, Ming H, Guo W, Chen H, Zhou CInt J Syst Evol Microbiol10.1099/ijsem.0.0012092016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21596Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25593Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25593)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88859Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402535.1