Strain identifier
BacDive ID: 130326
Type strain:
Species: Aquimarina pacifica
Strain Designation: SW150
Strain history: X.-H. Zhang SW150.
NCBI tax ID(s): 1296415 (species)
General
@ref: 21596
BacDive-ID: 130326
DSM-Number: 25593
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Aquimarina pacifica SW150 is a mesophilic bacterium that was isolated from surface seawater.
NCBI tax id
- NCBI tax id: 1296415
- Matching level: species
strain history
@ref | history |
---|---|
21596 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; sw150 |
67770 | X.-H. Zhang SW150. |
doi: 10.13145/bacdive130326.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aquimarina
- species: Aquimarina pacifica
- full scientific name: Aquimarina pacifica Zhang et al. 2014
@ref: 21596
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aquimarina
species: Aquimarina pacifica
full scientific name: Aquimarina pacifica Zhang et al. 2014
strain designation: SW150
type strain: yes
Morphology
colony morphology
- @ref: 21596
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21596
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21596 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | latitude | longitude |
---|---|---|---|---|
21596 | surface seawater | South Pacific Gyre at station U1369 (39° 19' S 139° 48' W) | -39.3167 | -139.8 |
67770 | Surface seawater in the South Pacific Gyre (39° 19' S 139° 48' W) | -39.3167 | -139.8 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_7456.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_2356;98_5464;99_7456&stattab=map
- Last taxonomy: Aquimarina pacifica subclade
- 16S sequence: KC476291
- Sequence Identity:
- Total samples: 94
- soil counts: 1
- aquatic counts: 58
- animal counts: 34
- plant counts: 1
Safety information
risk assessment
- @ref: 21596
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
21596 | Aquimarina pacifica strain SW150 16S ribosomal RNA gene, partial sequence | KC476291 | 1483 | ena | 1296415 |
67770 | Aquimarina sp. U1369-101122-SW150 16S ribosomal RNA gene, partial sequence | JQ082139 | 1428 | ena | 1171528 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aquimarina pacifica SW150 | 2579778789 | draft | img | 1296415 |
67770 | Aquimarina pacifica SW150 | GCA_000520955 | contig | ncbi | 1296415 |
GC content
- @ref: 21596
- GC-content: 33.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21596
culture collection no.: DSM 25593, CGMCC 1.12180, JCM 18214
straininfo link
- @ref: 88859
- straininfo: 402535
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24626966 | Aquimarina pacifica sp. nov., isolated from seawater. | Zhang Z, Yu T, Xu T, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.062695-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 27259860 | Aquimarina aggregata sp. nov., isolated from seawater. | Wang Y, Ming H, Guo W, Chen H, Zhou C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001209 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21596 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25593 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25593) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88859 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402535.1 |