Strain identifier
BacDive ID: 130324
Type strain:
Species: Faecalicoccus acidiformans
Strain Designation: 37-2, 37-2a
Strain history: <- C. de Maesschalck, Ghent Univ., Belgium; 37-2 <- V. Eeckhaut
NCBI tax ID(s): 915173 (species)
General
@ref: 22123
BacDive-ID: 130324
DSM-Number: 26963
keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic, Gram-positive
description: Faecalicoccus acidiformans 37-2 is an obligate anaerobe, mesophilic, Gram-positive bacterium that was isolated from caecal content of a 14-week old Isa Brown layer chicken.
NCBI tax id
- NCBI tax id: 915173
- Matching level: species
strain history
- @ref: 22123
- history: <- C. de Maesschalck, Ghent Univ., Belgium; 37-2 <- V. Eeckhaut
doi: 10.13145/bacdive130324.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Erysipelotrichaceae
- genus: Faecalicoccus
- species: Faecalicoccus acidiformans
- full scientific name: Faecalicoccus acidiformans De Maesschalck et al. 2014
@ref: 22123
domain: Bacteria
phylum: Firmicutes
class: Erysipelotrichia
order: Erysipelotrichales
family: Erysipelotrichaceae
genus: Faecalicoccus
species: Faecalicoccus acidiformans
full scientific name: Faecalicoccus acidiformans De Maesschalck et al. 2014
strain designation: 37-2, 37-2a
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.71
Culture and growth conditions
culture medium
- @ref: 22123
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
- @ref: 22123
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
22123 | obligate anaerobe | |
69480 | anaerobe | 99.182 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 97 |
69480 | no | 100 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | + | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22123 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 22123
- sample type: caecal content of a 14-week old Isa Brown layer chicken
- geographic location: Ghent, Merelbeke
- country: Belgium
- origin.country: BEL
- continent: Europe
- latitude: 50.9944
- longitude: 3.7461
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Birds | #Chicken |
#Host Body-Site | #Gastrointestinal tract | #Large intestine |
#Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_108862.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15783;96_43615;97_55836;98_73922;99_108862&stattab=map
- Last taxonomy: Faecalicoccus acidiformans subclade
- 16S sequence: HQ452864
- Sequence Identity:
- Total samples: 1921
- soil counts: 100
- aquatic counts: 31
- animal counts: 1771
- plant counts: 19
Safety information
risk assessment
- @ref: 22123
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22123
- description: Faecalicoccus acidiformans strain 37-2a 16S ribosomal RNA gene, partial sequence
- accession: HQ452864
- length: 1380
- database: ena
- NCBI tax ID: 915173
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Faecalicoccus acidiformans DSM 26963 | GCA_014202635 | scaffold | ncbi | 915173 |
66792 | Faecalicoccus acidiformans strain DSM 26963 | 915173.6 | wgs | patric | 915173 |
66792 | Faecalicoccus acidiformans DSM 26963 | 2861580396 | draft | img | 915173 |
GC content
- @ref: 22123
- GC-content: 40.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 97 | no |
flagellated | no | 96.732 | no |
gram-positive | yes | 87.982 | no |
anaerobic | yes | 99.219 | no |
aerobic | no | 99.212 | yes |
halophile | no | 62.301 | no |
spore-forming | no | 95.297 | no |
glucose-util | yes | 85.84 | no |
thermophile | no | 97.063 | yes |
motile | no | 92.117 | no |
glucose-ferment | yes | 63.982 | no |
External links
@ref: 22123
culture collection no.: DSM 26963, LMG 27428
straininfo link
- @ref: 88857
- straininfo: 387256
literature
- topic: Phylogeny
- Pubmed-ID: 25180093
- title: Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae.
- authors: De Maesschalck C, Van Immerseel F, Eeckhaut V, De Baere S, Cnockaert M, Croubels S, Haesebrouck F, Ducatelle R, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.064626-0
- year: 2014
- mesh: Animals, Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cecum/*microbiology, Chickens/*microbiology, DNA, Bacterial/genetics, Eubacterium/classification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Streptococcus/classification
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22123 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26963 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26963) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68380 | Automatically annotated from API rID32A | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
88857 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387256.1 |