Strain identifier

BacDive ID: 130324

Type strain: Yes

Species: Faecalicoccus acidiformans

Strain Designation: 37-2, 37-2a

Strain history: <- C. de Maesschalck, Ghent Univ., Belgium; 37-2 <- V. Eeckhaut

NCBI tax ID(s): 915173 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22123

BacDive-ID: 130324

DSM-Number: 26963

keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic, Gram-positive

description: Faecalicoccus acidiformans 37-2 is an obligate anaerobe, mesophilic, Gram-positive bacterium that was isolated from caecal content of a 14-week old Isa Brown layer chicken.

NCBI tax id

  • NCBI tax id: 915173
  • Matching level: species

strain history

  • @ref: 22123
  • history: <- C. de Maesschalck, Ghent Univ., Belgium; 37-2 <- V. Eeckhaut

doi: 10.13145/bacdive130324.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Erysipelotrichia
  • order: Erysipelotrichales
  • family: Erysipelotrichaceae
  • genus: Faecalicoccus
  • species: Faecalicoccus acidiformans
  • full scientific name: Faecalicoccus acidiformans De Maesschalck et al. 2014

@ref: 22123

domain: Bacteria

phylum: Firmicutes

class: Erysipelotrichia

order: Erysipelotrichales

family: Erysipelotrichaceae

genus: Faecalicoccus

species: Faecalicoccus acidiformans

full scientific name: Faecalicoccus acidiformans De Maesschalck et al. 2014

strain designation: 37-2, 37-2a

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 99.71

Culture and growth conditions

culture medium

  • @ref: 22123
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 22123
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
22123obligate anaerobe
69480anaerobe99.182

spore formation

@refspore formationconfidence
69481no97
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22123---------------+------+------

Isolation, sampling and environmental information

isolation

  • @ref: 22123
  • sample type: caecal content of a 14-week old Isa Brown layer chicken
  • geographic location: Ghent, Merelbeke
  • country: Belgium
  • origin.country: BEL
  • continent: Europe
  • latitude: 50.9944
  • longitude: 3.7461

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_108862.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15783;96_43615;97_55836;98_73922;99_108862&stattab=map
  • Last taxonomy: Faecalicoccus acidiformans subclade
  • 16S sequence: HQ452864
  • Sequence Identity:
  • Total samples: 1921
  • soil counts: 100
  • aquatic counts: 31
  • animal counts: 1771
  • plant counts: 19

Safety information

risk assessment

  • @ref: 22123
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22123
  • description: Faecalicoccus acidiformans strain 37-2a 16S ribosomal RNA gene, partial sequence
  • accession: HQ452864
  • length: 1380
  • database: ena
  • NCBI tax ID: 915173

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Faecalicoccus acidiformans DSM 26963GCA_014202635scaffoldncbi915173
66792Faecalicoccus acidiformans strain DSM 26963915173.6wgspatric915173
66792Faecalicoccus acidiformans DSM 269632861580396draftimg915173

GC content

  • @ref: 22123
  • GC-content: 40.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
flagellatedno96.732no
gram-positiveyes87.982no
anaerobicyes99.219no
aerobicno99.212yes
halophileno62.301no
spore-formingno95.297no
glucose-utilyes85.84no
thermophileno97.063yes
motileno92.117no
glucose-fermentyes63.982no

External links

@ref: 22123

culture collection no.: DSM 26963, LMG 27428

straininfo link

  • @ref: 88857
  • straininfo: 387256

literature

  • topic: Phylogeny
  • Pubmed-ID: 25180093
  • title: Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae.
  • authors: De Maesschalck C, Van Immerseel F, Eeckhaut V, De Baere S, Cnockaert M, Croubels S, Haesebrouck F, Ducatelle R, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064626-0
  • year: 2014
  • mesh: Animals, Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cecum/*microbiology, Chickens/*microbiology, DNA, Bacterial/genetics, Eubacterium/classification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Streptococcus/classification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22123Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26963Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26963)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88857Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID387256.1