Strain identifier
BacDive ID: 130256
Type strain:
Species: Comamonas humi
Strain Designation: GAU11
Strain history: K. Hatayama GAU11.
NCBI tax ID(s): 1457523 (species)
version 8.1 (current version)
General
@ref: 21555
BacDive-ID: 130256
DSM-Number: 28451
keywords: 16S sequence, Bacteria, mesophilic
description: Comamonas humi GAU11 is a mesophilic bacterium that was isolated from soil from an urban area.
NCBI tax id
- NCBI tax id: 1457523
- Matching level: species
strain history
@ref | history |
---|---|
21555 | <- K. Hatayama, Sagami Chemical Research Institute, Kanagawa, Japan; GAU11 |
67770 | K. Hatayama GAU11. |
doi: 10.13145/bacdive130256.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Comamonas
- species: Comamonas humi
- full scientific name: Comamonas humi Hatayama 2014
@ref: 21555
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Comamonas
species: Comamonas humi
full scientific name: Comamonas humi Hatayama 2014
strain designation: GAU11
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21555
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21555 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21555 | soil from an urban area | Tokyo, Machida | Japan | JPN | Asia |
67770 | Soil sample collected in an urban area in Machida | Tokyo | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 21555
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21555
- description: Comamonas humi gene for 16S ribosomal RNA, partial sequence
- accession: AB907700
- length: 1453
- database: ena
- NCBI tax ID: 1457523
GC content
- @ref: 21555
- GC-content: 68.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21555
culture collection no.: DSM 28451, JCM 19903
straininfo link
- @ref: 88796
- straininfo: 405336
literature
- topic: Phylogeny
- Pubmed-ID: 25212224
- title: Comamonas humi sp. nov., isolated from soil.
- authors: Hatayama K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.067439-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21555 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28451 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28451) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
88796 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405336.1 |