Strain identifier

BacDive ID: 130256

Type strain: Yes

Species: Comamonas humi

Strain Designation: GAU11

Strain history: K. Hatayama GAU11.

NCBI tax ID(s): 1457523 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21555

BacDive-ID: 130256

DSM-Number: 28451

keywords: 16S sequence, Bacteria, mesophilic

description: Comamonas humi GAU11 is a mesophilic bacterium that was isolated from soil from an urban area.

NCBI tax id

  • NCBI tax id: 1457523
  • Matching level: species

strain history

@refhistory
21555<- K. Hatayama, Sagami Chemical Research Institute, Kanagawa, Japan; GAU11
67770K. Hatayama GAU11.

doi: 10.13145/bacdive130256.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas humi
  • full scientific name: Comamonas humi Hatayama 2014

@ref: 21555

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas humi

full scientific name: Comamonas humi Hatayama 2014

strain designation: GAU11

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21555
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21555positivegrowth25mesophilic
67770positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21555soil from an urban areaTokyo, MachidaJapanJPNAsia
67770Soil sample collected in an urban area in MachidaTokyoJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 21555
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21555
  • description: Comamonas humi gene for 16S ribosomal RNA, partial sequence
  • accession: AB907700
  • length: 1453
  • database: ena
  • NCBI tax ID: 1457523

GC content

  • @ref: 21555
  • GC-content: 68.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21555

culture collection no.: DSM 28451, JCM 19903

straininfo link

  • @ref: 88796
  • straininfo: 405336

literature

  • topic: Phylogeny
  • Pubmed-ID: 25212224
  • title: Comamonas humi sp. nov., isolated from soil.
  • authors: Hatayama K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.067439-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21555Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28451Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28451)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
88796Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405336.1