Strain identifier

BacDive ID: 130254

Type strain: Yes

Species: Comamonas jiangduensis

Strain Designation: YW1

Strain history: <- KACC <- L.-N. Sun et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; YW1

NCBI tax ID(s): 1194168 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21553

BacDive-ID: 130254

DSM-Number: 100319

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Comamonas jiangduensis YW1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil from rice field.

NCBI tax id

  • NCBI tax id: 1194168
  • Matching level: species

strain history

  • @ref: 21553
  • history: <- KACC <- L.-N. Sun et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; YW1

doi: 10.13145/bacdive130254.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas jiangduensis
  • full scientific name: Comamonas jiangduensis Sun et al. 2013

@ref: 21553

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas jiangduensis

full scientific name: Comamonas jiangduensis Sun et al. 2013

strain designation: YW1

type strain: yes

Morphology

cell morphology

  • @ref: 30841
  • gram stain: negative
  • cell length: 1.35 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30841
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21553
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21553positivegrowth28mesophilic
30841positiveoptimum37mesophilic

culture pH

  • @ref: 30841
  • ability: positive
  • type: optimum
  • pH: 7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 30841
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30841
  • spore formation: no

compound production

  • @ref: 21553
  • compound: surfactant

halophily

  • @ref: 30841
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 1 %

observation

  • @ref: 30841
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3084130089acetate+carbon source
30841286442-oxopentanoate+carbon source
3084115740formate+carbon source
3084117754glycerol+carbon source
3084117240itaconate+carbon source
3084124996lactate+carbon source
3084125017leucine+carbon source
3084126271proline+carbon source
3084117272propionate+carbon source
3084151850methyl pyruvate+carbon source
3084130031succinate+carbon source
3084126986threonine+carbon source
3084153423tween 40+carbon source
3084153426tween 80+carbon source

enzymes

@refvalueactivityec
30841catalase+1.11.1.6
30841cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 21553
  • sample type: soil from rice field
  • geographic location: Jiangsu Province, Jiangdu City
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 31.3667
  • longitude: 120.933

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 21553
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21553
  • description: Comamonas jiangduensis strain YW1 16S ribosomal RNA gene, partial sequence
  • accession: JQ941713
  • length: 1455
  • database: ena
  • NCBI tax ID: 1194168

GC content

@refGC-content
3084165.3
2155363.3

External links

@ref: 21553

culture collection no.: DSM 100319, CCTCC AB 2012033, KACC 16697

straininfo link

  • @ref: 88794
  • straininfo: 398118

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23125317Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil.Sun LN, Zhang J, Chen Q, He J, Li QF, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.045716-02012Agriculture, Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/microbiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Surface-Active Agents/metabolism, UbiquinoneGenetics
Genetics33574105Draft Genome Sequence of Comamonas jiangduensis Strain YW1(T).Kangale LJ, Levasseur A, Raoult D, Ghigo E, Fournier PEMicrobiol Resour Announc10.1128/MRA.00513-202021

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21553Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100319Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100319)
30841Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172717128776041
88794Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398118.1