Strain identifier
BacDive ID: 130252
Type strain: 
Species: Caldisalinibacter kiritimatiensis
Strain Designation: L21-TYG-TH, L21-TH-D2
Strain history: DSM 26826 <-- S. Spring; DSMZ, Germany; L21-TH-D2.
NCBI tax ID(s): 1304284 (species)
version 8.1 (current version)
General
@ref: 22151
BacDive-ID: 130252
DSM-Number: 26826
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Caldisalinibacter kiritimatiensis L21-TYG-TH is an anaerobe, thermophilic bacterium that was isolated from anoxic zone of a hypersaline microbial mat.
NCBI tax id
- NCBI tax id: 1304284
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22151 | <- S. Spring, Leibniz-Institut DSMZ GmbH; L21-TH-D2 <- S. Spring {2011} |
| 67770 | DSM 26826 <-- S. Spring; DSMZ, Germany; L21-TH-D2. |
doi: 10.13145/bacdive130252.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Caldisalinibacter
- species: Caldisalinibacter kiritimatiensis
- full scientific name: Caldisalinibacter kiritimatiensis Ben Hania et al. 2015
@ref: 22151
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Caldisalinibacter
species: Caldisalinibacter kiritimatiensis
full scientific name: Caldisalinibacter kiritimatiensis Ben Hania et al. 2015
strain designation: L21-TYG-TH, L21-TH-D2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22151
- name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1459
- composition: Name: THERMOHALOBACTER MEDIUM (DSMZ Medium 1459) Composition: D-Glucose 10.0 g/l KCl 4.0 g/l NaHCO3 2.5 g/l MgCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l Trypticase peptone 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Na-acetate 0.5 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l NH4Cl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0028 g/l CoCl2 x 6 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l AlK(SO4)2 x 12 H2O 0.00018 g/l Na2SeO4 0.0001 g/l Na2WO4 x 2 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22151 | positive | growth | 55 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 22151
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22151 | anoxic zone of a hypersaline microbial mat | Kiritimati, Lake 21 | Kiribati | KIR | Australia and Oceania |
| 67770 | Anoxic zone of a microbial mat of the hypersaline Lake 21 on the Kiritimati Atoll | Kiribati | KIR | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Microbial community | #Microbial mat |
| #Condition | #Anoxic (anaerobic) | |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_44427.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_20446;97_25428;98_32237;99_44427&stattab=map
- Last taxonomy: Caldisalinibacter kiritimatiensis subclade
- 16S sequence: KC608867
- Sequence Identity:
- Total samples: 110
- soil counts: 12
- aquatic counts: 63
- animal counts: 32
- plant counts: 3
Safety information
risk assessment
- @ref: 22151
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22151
- description: Caldisalinibacter kiritimatiensis strain L21-TH-D2 16S ribosomal RNA gene, partial sequence
- accession: KC608867
- length: 1526
- database: ena
- NCBI tax ID: 1304284
Genome sequences
- @ref: 67770
- description: Caldisalinibacter kiritimatiensis L21-TH-D2
- accession: GCA_000387765
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1304284
GC content
- @ref: 22151
- GC-content: 30.7
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 83.027 | no |
| flagellated | no | 68.54 | no |
| gram-positive | yes | 74.459 | no |
| anaerobic | yes | 99.294 | yes |
| aerobic | no | 97.808 | yes |
| halophile | no | 76.489 | no |
| spore-forming | yes | 82.025 | no |
| thermophile | yes | 99.725 | yes |
| glucose-util | yes | 91.686 | no |
| glucose-ferment | yes | 58.22 | no |
External links
@ref: 22151
culture collection no.: DSM 26826, JCM 18664
straininfo link
- @ref: 88792
- straininfo: 400890
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22151 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26826 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26826) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88792 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400890.1 |