Strain identifier
BacDive ID: 130248
Type strain: 
Species: Clostridium algifaecis
Strain Designation: MB9-7
Strain history: <- DSM <- Y Wu, CAS, Inst of Microbiol, MB9-7 <- Y Wu, 2011
NCBI tax ID(s): 1472040 (species)
version 8.1 (current version)
General
@ref: 21882
BacDive-ID: 130248
DSM-Number: 28783
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, rod-shaped
description: Clostridium algifaecis MB9-7 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from decomposing algal scum.
NCBI tax id
- NCBI tax id: 1472040
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21882 | <- Y. Wu, CAS, Inst. of Microbiol.; MB9-7 <- Y. Wu {2011} |
| 67771 | <- DSM <- Y Wu, CAS, Inst of Microbiol, MB9-7 <- Y Wu, 2011 |
doi: 10.13145/bacdive130248.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium algifaecis
- full scientific name: Clostridium algifaecis Wu et al. 2014
@ref: 21882
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium algifaecis
full scientific name: Clostridium algifaecis Wu et al. 2014
strain designation: MB9-7
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | motility | confidence |
|---|---|---|---|---|
| 67771 | rod-shaped | |||
| 67771 | positive | |||
| 69480 | yes | 91.507 | ||
| 69480 | positive | 99.999 |
Culture and growth conditions
culture medium
- @ref: 21882
- name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104c
- composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21882 | positive | growth | 25 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 21882 | anaerobe | |
| 67771 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 99.448 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21882 | decomposing algal scum | Jiangsu Province, Wuxi City, Lake Taihu | China | CHN | Asia |
| 67771 | From decomposing algal scum | Lake Taihu, Wuxi City, Jiangsu Province | China | CHN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
taxonmaps
- @ref: 69479
- File name: preview.99_183000.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_42;96_67474;97_87673;98_119182;99_183000&stattab=map
- Last taxonomy: Clostridium algifaecis subclade
- 16S sequence: KJ001788
- Sequence Identity:
- Total samples: 1303
- soil counts: 375
- aquatic counts: 419
- animal counts: 418
- plant counts: 91
Safety information
risk assessment
- @ref: 21882
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21882
- description: Clostridium algifaecis strain MB9-7 16S ribosomal RNA gene, partial sequence
- accession: KJ001788
- length: 1476
- database: ena
- NCBI tax ID: 1472040
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium algifaecis DSM 28783 | GCA_017874415 | contig | ncbi | 1472040 |
| 66792 | Clostridium algifaecis strain DSM 28783 | 1472040.4 | wgs | patric | 1472040 |
| 66792 | Clostridium algifaecis DSM 28783 | 2913517078 | draft | img | 1472040 |
GC content
- @ref: 21882
- GC-content: 28.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 81.579 | no |
| gram-positive | no | 58.036 | no |
| anaerobic | yes | 99.685 | no |
| aerobic | no | 98.313 | yes |
| halophile | no | 94.45 | no |
| spore-forming | yes | 94.742 | no |
| thermophile | no | 83.473 | no |
| glucose-util | yes | 86.97 | no |
| flagellated | yes | 53.229 | no |
| glucose-ferment | yes | 72.435 | no |
External links
@ref: 21882
culture collection no.: DSM 28783, CGMCC 1.5188, KCTC 15507
straininfo link
- @ref: 88787
- straininfo: 403988
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25168611 | Clostridium algifaecis sp. nov., an anaerobic bacterial species from decomposing algal scum. | Wu YF, Zheng H, Wu QL, Yang H, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.064345-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, Clostridium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology | Genetics |
| Phylogeny | 29034861 | Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage. | Kobayashi H, Nakasato T, Sakamoto M, Ohtani Y, Terada F, Sakai K, Ohkuma M, Tohno M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002387 | 2017 | Bacterial Typing Techniques, Base Composition, Butyric Acid/*metabolism, Clostridium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Japan, Phospholipids/chemistry, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Silage/*microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21882 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28783 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28783) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88787 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403988.1 |