Strain identifier
BacDive ID: 130242
Type strain: 
Species: Chlamydia pecorum
Strain Designation: Bo/E58, E58, 14DC102
Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; E58 <- S. H. McNutt and E. F. Waller
NCBI tax ID(s): 85991 (species)
version 8.1 (current version)
General
@ref: 21989
BacDive-ID: 130242
DSM-Number: 29919
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Chlamydia pecorum Bo/E58 is a mesophilic animal pathogen that was isolated from calf brain .
NCBI tax id
- NCBI tax id: 85991
- Matching level: species
strain history
- @ref: 21989
- history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; E58 <- S. H. McNutt and E. F. Waller
doi: 10.13145/bacdive130242.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia pecorum
- full scientific name: Chlamydia pecorum Fukushi and Hirai 1992
synonyms
- @ref: 20215
- synonym: Chlamydophila pecorum
@ref: 21989
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia pecorum
full scientific name: Chlamydia pecorum Fukushi and Hirai 1992
strain designation: Bo/E58, E58, 14DC102
type strain: yes
Morphology
colony morphology
- @ref: 21989
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 21989
- name: CULTIVATION OF CHLAMYDOPHILA PECORUM (DSMZ Medium 1503)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1503
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDOPHILA PECORUM (DSMZ Medium 1503) Composition: Aminoacids Fetal bovine serum MEM-Medium
culture temp
- @ref: 21989
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21989
- sample type: calf brain (Sporadic Bovine Encephalomyelitis)
- geographic location: Iowa
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Bovinae (Cow, Cattle)
taxonmaps
- @ref: 69479
- File name: preview.99_2101.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_62;96_169;97_1355;98_1643;99_2101&stattab=map
- Last taxonomy: Chlamydia pecorum subclade
- 16S sequence: U73785
- Sequence Identity:
- Total samples: 1028
- soil counts: 56
- aquatic counts: 16
- animal counts: 955
- plant counts: 1
Safety information
risk assessment
- @ref: 21989
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 21989 | Chlamydophila pecorum gene for 16S rRNA, strain: E58 | D88317 | 1548 | ena | 331635 |
| 21989 | Chlamydia pecorum 16S ribosomal RNA gene, partial sequence | U73785 | 1354 | ena | 85991 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia pecorum E58 | GCA_000204135 | complete | ncbi | 331635 |
| 66792 | Chlamydia pecorum E58 | 650716022 | complete | img | 331635 |
GC content
- @ref: 21989
- GC-content: 41.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 65.374 | no |
| flagellated | no | 95.696 | no |
| gram-positive | no | 96.76 | no |
| anaerobic | no | 67.785 | no |
| aerobic | no | 89.727 | no |
| halophile | yes | 59.26 | no |
| spore-forming | no | 97.419 | no |
| thermophile | no | 75.691 | yes |
| glucose-util | yes | 77.686 | no |
| glucose-ferment | yes | 52.099 | no |
External links
@ref: 21989
culture collection no.: DSM 29919, ATCC VR628
straininfo link
- @ref: 88784
- straininfo: 402684
literature
- topic: Phylogeny
- Pubmed-ID: 1581191
- title: Proposal of Chlamydia pecorum sp. nov. for Chlamydia strains derived from ruminants.
- authors: Fukushi H, Hirai K
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-42-2-306
- year: 1992
- mesh: Animals, Cattle, Cattle Diseases/microbiology, Chlamydia/*classification/genetics/isolation & purification/ultrastructure, Chlamydia Infections/microbiology/*veterinary, Microscopy, Electron, Ruminants/*microbiology, Sheep, Sheep Diseases/microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21989 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29919 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29919) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88784 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402684.1 |