Strain identifier
BacDive ID: 130219
Type strain: 
Species: Afipia sp.
Strain Designation: SG-6C
Strain history: <- G. Pandey, CSIRO Entomology, Acton, Australia; SG-6C
NCBI tax ID(s): 1871052 (species)
version 9.2 (current version)
General
@ref: 21709
BacDive-ID: 130219
DSM-Number: 23264
keywords: 16S sequence, Bacteria, mesophilic
description: Afipia sp. SG-6C is a mesophilic bacterium that was isolated from pesticide -contaminated soil.
NCBI tax id
- NCBI tax id: 1871052
- Matching level: species
strain history
- @ref: 21709
- history: <- G. Pandey, CSIRO Entomology, Acton, Australia; SG-6C
doi: 10.13145/bacdive130219.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Afipia
- species: Afipia sp.
- full scientific name: Afipia Brenner et al. 1992
synonyms
- @ref: 20215
- synonym: Oligotropha
@ref: 21709
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Oligotropha
species: Oligotropha sp.
full scientific name: Oligotropha sp.
strain designation: SG-6C
type strain: no
Morphology
multimedia
- @ref: 21709
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23264.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21709
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 21709
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
compound production
- @ref: 21709
- compound: 6 chloronicotinic acid chlorohydrolase
Isolation, sampling and environmental information
isolation
- @ref: 21709
- sample type: pesticide (imidacloprid)-contaminated soil
- geographic location: Canberra, Acton
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Soil |
Sequence information
16S sequences
- @ref: 21709
- description: Bradyrhizobiaceae bacterium SG-6C ribosomal RNA operon, complete sequence
- accession: GU324241
- length: 5378
- database: nuccore
- NCBI tax ID: 709797
External links
@ref: 21709
culture collection no.: DSM 23264
straininfo link
- @ref: 88761
- straininfo: 402604
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21709 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23264 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23264) | |
| 88761 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402604.1 |