Strain identifier

BacDive ID: 130214

Type strain: Yes

Species: Bartonella elizabethae

Strain Designation: B91-002005, F9251

Strain history: CIP <- 1993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251

NCBI tax ID(s): 1094555 (strain), 807 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21531

BacDive-ID: 130214

DSM-Number: 28217

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Bartonella elizabethae B91-002005 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from human blood, endocarditis.

NCBI tax id

NCBI tax idMatching level
807species
1094555strain

strain history

@refhistory
21531<- CIP; CIP 103761 <- J. S. Daly, St. Elizabeth's Hospital; Brighton, Massachusetts, USA; F9251
327251993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251
119008CIP <- 1993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251

doi: 10.13145/bacdive130214.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella elizabethae
  • full scientific name: Bartonella elizabethae (Daly et al. 1993) Brenner et al. 1993
  • synonyms

    • @ref: 20215
    • synonym: Rochalimaea elizabethae

@ref: 21531

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella elizabethae

full scientific name: Bartonella elizabethae (Daly et al. 1993) Brenner et al. 1993

strain designation: B91-002005, F9251

type strain: yes

Morphology

cell morphology

  • @ref: 119008
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@reftype of hemolysisincubation period
21531gamma1-2 days
119008

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21531Columbia blood agar 10% (DSMZ Medium 429e)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium429e.pdf
32725MEDIUM 70 - columbia agar with horse blood and hemin for BartonellayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);Hemin solution - M00149 (10.000 ml)
119008CIP Medium 70yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=70
119008CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
21531positivegrowth37mesophilic
32725positivegrowth37mesophilic
119008positivegrowth30-37mesophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119008nitrate-reduction17632
119008nitrite-reduction16301

metabolite production

  • @ref: 119008
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
21531catalase-1.11.1.6
21531cytochrome-c oxidase-1.9.3.1
119008oxidase-
119008beta-galactosidase+3.2.1.23
119008alcohol dehydrogenase-1.1.1.1
119008catalase+1.11.1.6
119008lysine decarboxylase-4.1.1.18
119008ornithine decarboxylase-4.1.1.17
119008phenylalanine ammonia-lyase-4.3.1.24
119008urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119008--++-++-+-----------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119008-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling dateisolation date
21531human blood, endocarditisMassachusetts, BrightonUSAUSANorth America42.3464-71.1627
50089Human blood,endocarditisMass,BrightonUSAUSANorth America1993
119008Human, BloodBrighton, MassachusettsUnited States of AmericaUSANorth America1986

isolation source categories

  • Cat1: #Infection
  • Cat2: #Medical environment
  • Cat3: #Clinic

taxonmaps

  • @ref: 69479
  • File name: preview.99_1245.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_1245&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: L01260
  • Sequence Identity:
  • Total samples: 172
  • soil counts: 29
  • aquatic counts: 22
  • animal counts: 118
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
215312Risk group (German classification)
1190082Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21531
  • description: Rochalimaea elizabethae 16S ribosomal RNA gene
  • accession: L01260
  • length: 1466
  • database: ena
  • NCBI tax ID: 807

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella elizabethae F9251 = ATCC 49927GCA_902825135scaffoldncbi1094555
66792Bartonella elizabethae F9251 = ATCC 49927GCA_000518165scaffoldncbi1094555
66792Bartonella elizabethae F9251 = ATCC 49927GCA_000278315scaffoldncbi1094555
66792Bartonella elizabethae ATCC 499271408427.3wgspatric1094555
66792Bartonella elizabethae F92511094555.3wgspatric1094555
66792Bartonella elizabethae F9251 = ATCC 499271094555.4wgspatric1094555
66792Bartonella elizabethae F92512529293192draftimg1094555
66792Bartonella elizabethae F9251, ATCC 499272545555865draftimg1094555

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.785no
gram-positiveno98.192no
anaerobicno97.543no
aerobicno95.055no
halophileno58.74no
spore-formingno97.417no
thermophileno89.8yes
glucose-utilno50no
motileno90.521no
glucose-fermentno76.028no

External links

@ref: 21531

culture collection no.: DSM 28217, ATCC 49927, CCUG 30455, CIP 103761

straininfo link

  • @ref: 88757
  • straininfo: 42759

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7681847Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis.Daly JS, Worthington MG, Brenner DJ, Moss CW, Hollis DG, Weyant RS, Steigerwalt AG, Weaver RE, Daneshvar MI, O'Connor SPJ Clin Microbiol10.1128/jcm.31.4.872-881.19931993Adult, Base Composition, Base Sequence, DNA, Bacterial/analysis, Endocarditis, Bacterial/*microbiology, Fatty Acids/analysis, Humans, Male, Molecular Sequence Data, Phenotype, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Rickettsiaceae/classification/genetics/*isolation & purification, Rickettsiaceae Infections/*microbiologyPathogenicity
Genetics26658020Whole-genome sequence analysis and exploration of the zoonotic potential of a rat-borne Bartonella elizabethae.Tay ST, Kho KL, Wee WY, Choo SWActa Trop10.1016/j.actatropica.2015.11.0192015Animals, Bartonella/*genetics, Bartonella Infections/*epidemiology/microbiology, Disease Reservoirs, Genomics, Humans, Malaysia/epidemiology, Polymerase Chain Reaction, Rats, *Zoonoses/epidemiology/microbiologyPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21531Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28217Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28217)
32725Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15594
50089Curators of the CCUGhttps://www.ccug.se/strain?id=30455Culture Collection University of Gothenburg (CCUG) (CCUG 30455)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42759.1
119008Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103761Collection of Institut Pasteur (CIP 103761)