Strain identifier
BacDive ID: 130214
Type strain:
Species: Bartonella elizabethae
Strain Designation: B91-002005, F9251
Strain history: CIP <- 1993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251
NCBI tax ID(s): 1094555 (strain), 807 (species)
General
@ref: 21531
BacDive-ID: 130214
DSM-Number: 28217
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Bartonella elizabethae B91-002005 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from human blood, endocarditis.
NCBI tax id
NCBI tax id | Matching level |
---|---|
807 | species |
1094555 | strain |
strain history
@ref | history |
---|---|
21531 | <- CIP; CIP 103761 <- J. S. Daly, St. Elizabeth's Hospital; Brighton, Massachusetts, USA; F9251 |
32725 | 1993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251 |
119008 | CIP <- 1993, J.S. Daly, Med. Center of Central Massachusetts, MA, USA: strain F9251 |
doi: 10.13145/bacdive130214.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella elizabethae
- full scientific name: Bartonella elizabethae (Daly et al. 1993) Brenner et al. 1993
synonyms
- @ref: 20215
- synonym: Rochalimaea elizabethae
@ref: 21531
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella elizabethae
full scientific name: Bartonella elizabethae (Daly et al. 1993) Brenner et al. 1993
strain designation: B91-002005, F9251
type strain: yes
Morphology
cell morphology
- @ref: 119008
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | type of hemolysis | incubation period |
---|---|---|
21531 | gamma | 1-2 days |
119008 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
21531 | Columbia blood agar 10% (DSMZ Medium 429e) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium429e.pdf | |
32725 | MEDIUM 70 - columbia agar with horse blood and hemin for Bartonella | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);Hemin solution - M00149 (10.000 ml) | |
119008 | CIP Medium 70 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=70 | |
119008 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21531 | positive | growth | 37 | mesophilic |
32725 | positive | growth | 37 | mesophilic |
119008 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
119008 | nitrate | - | reduction | 17632 |
119008 | nitrite | - | reduction | 16301 |
metabolite production
- @ref: 119008
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
21531 | catalase | - | 1.11.1.6 |
21531 | cytochrome-c oxidase | - | 1.9.3.1 |
119008 | oxidase | - | |
119008 | beta-galactosidase | + | 3.2.1.23 |
119008 | alcohol dehydrogenase | - | 1.1.1.1 |
119008 | catalase | + | 1.11.1.6 |
119008 | lysine decarboxylase | - | 4.1.1.18 |
119008 | ornithine decarboxylase | - | 4.1.1.17 |
119008 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119008 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119008 | - | - | + | + | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119008 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | sampling date | isolation date |
---|---|---|---|---|---|---|---|---|---|
21531 | human blood, endocarditis | Massachusetts, Brighton | USA | USA | North America | 42.3464 | -71.1627 | ||
50089 | Human blood,endocarditis | Mass,Brighton | USA | USA | North America | 1993 | |||
119008 | Human, Blood | Brighton, Massachusetts | United States of America | USA | North America | 1986 |
isolation source categories
- Cat1: #Infection
- Cat2: #Medical environment
- Cat3: #Clinic
taxonmaps
- @ref: 69479
- File name: preview.99_1245.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_1245&stattab=map
- Last taxonomy: Bartonella
- 16S sequence: L01260
- Sequence Identity:
- Total samples: 172
- soil counts: 29
- aquatic counts: 22
- animal counts: 118
- plant counts: 3
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
21531 | 2 | Risk group (German classification) |
119008 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 21531
- description: Rochalimaea elizabethae 16S ribosomal RNA gene
- accession: L01260
- length: 1466
- database: ena
- NCBI tax ID: 807
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bartonella elizabethae F9251 = ATCC 49927 | GCA_902825135 | scaffold | ncbi | 1094555 |
66792 | Bartonella elizabethae F9251 = ATCC 49927 | GCA_000518165 | scaffold | ncbi | 1094555 |
66792 | Bartonella elizabethae F9251 = ATCC 49927 | GCA_000278315 | scaffold | ncbi | 1094555 |
66792 | Bartonella elizabethae ATCC 49927 | 1408427.3 | wgs | patric | 1094555 |
66792 | Bartonella elizabethae F9251 | 1094555.3 | wgs | patric | 1094555 |
66792 | Bartonella elizabethae F9251 = ATCC 49927 | 1094555.4 | wgs | patric | 1094555 |
66792 | Bartonella elizabethae F9251 | 2529293192 | draft | img | 1094555 |
66792 | Bartonella elizabethae F9251, ATCC 49927 | 2545555865 | draft | img | 1094555 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.785 | no |
gram-positive | no | 98.192 | no |
anaerobic | no | 97.543 | no |
aerobic | no | 95.055 | no |
halophile | no | 58.74 | no |
spore-forming | no | 97.417 | no |
thermophile | no | 89.8 | yes |
glucose-util | no | 50 | no |
motile | no | 90.521 | no |
glucose-ferment | no | 76.028 | no |
External links
@ref: 21531
culture collection no.: DSM 28217, ATCC 49927, CCUG 30455, CIP 103761
straininfo link
- @ref: 88757
- straininfo: 42759
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 7681847 | Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis. | Daly JS, Worthington MG, Brenner DJ, Moss CW, Hollis DG, Weyant RS, Steigerwalt AG, Weaver RE, Daneshvar MI, O'Connor SP | J Clin Microbiol | 10.1128/jcm.31.4.872-881.1993 | 1993 | Adult, Base Composition, Base Sequence, DNA, Bacterial/analysis, Endocarditis, Bacterial/*microbiology, Fatty Acids/analysis, Humans, Male, Molecular Sequence Data, Phenotype, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Rickettsiaceae/classification/genetics/*isolation & purification, Rickettsiaceae Infections/*microbiology | Pathogenicity |
Genetics | 26658020 | Whole-genome sequence analysis and exploration of the zoonotic potential of a rat-borne Bartonella elizabethae. | Tay ST, Kho KL, Wee WY, Choo SW | Acta Trop | 10.1016/j.actatropica.2015.11.019 | 2015 | Animals, Bartonella/*genetics, Bartonella Infections/*epidemiology/microbiology, Disease Reservoirs, Genomics, Humans, Malaysia/epidemiology, Polymerase Chain Reaction, Rats, *Zoonoses/epidemiology/microbiology | Pathogenicity |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21531 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28217 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28217) | |
32725 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15594 | ||
50089 | Curators of the CCUG | https://www.ccug.se/strain?id=30455 | Culture Collection University of Gothenburg (CCUG) (CCUG 30455) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42759.1 | |
119008 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103761 | Collection of Institut Pasteur (CIP 103761) |