Strain identifier
BacDive ID: 130211
Type strain: 
Species: Domibacillus enclensis
Strain Designation: NIO-1016
Strain history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1016
NCBI tax ID(s): 1017273 (species)
version 8.1 (current version)
General
@ref: 22098
BacDive-ID: 130211
DSM-Number: 25145
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, motile
description: Domibacillus enclensis NIO-1016 is a spore-forming, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1017273
- Matching level: species
strain history
- @ref: 22098
- history: <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1016
doi: 10.13145/bacdive130211.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Domibacillus
- species: Domibacillus enclensis
- full scientific name: Domibacillus enclensis Sonalkar et al. 2014
@ref: 22098
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Domibacillus
species: Domibacillus enclensis
full scientific name: Domibacillus enclensis Sonalkar et al. 2014
strain designation: NIO-1016
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.931 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 99.447 |
Isolation, sampling and environmental information
isolation
- @ref: 22098
- sample type: marine sediment
- geographic location: Goa Province, Chorao Island
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_4425.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1025;97_1195;98_3327;99_4425&stattab=map
- Last taxonomy: Domibacillus
- 16S sequence: JF893466
- Sequence Identity:
- Total samples: 243
- soil counts: 50
- aquatic counts: 38
- animal counts: 109
- plant counts: 46
Sequence information
16S sequences
- @ref: 22098
- description: Domibacillus enclensis strain NIO-1016 16S ribosomal RNA gene, partial sequence
- accession: JF893466
- length: 1483
- database: ena
- NCBI tax ID: 1017273
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Domibacillus enclensis DSM 25145 | GCA_002237775 | contig | ncbi | 1017273 |
| 66792 | Domibacillus enclensis NIO-1016 | GCA_900156125 | contig | ncbi | 1017273 |
| 66792 | Domibacillus enclensis NIO-1016 | GCA_000966185 | contig | ncbi | 1017273 |
| 66792 | Domibacillus enclensis strain DSM 25145 | 1017273.7 | wgs | patric | 1017273 |
| 66792 | Domibacillus enclensis strain DSM 25145 | 1017273.8 | wgs | patric | 1017273 |
| 66792 | Domibacillus enclensis NIO-1016 | 2636415762 | draft | img | 1017273 |
| 66792 | Domibacillus enclensis NIO-1016 | 2708742528 | draft | img | 1017273 |
GC content
- @ref: 22098
- GC-content: 46.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 91.242 | no |
| flagellated | yes | 91.966 | no |
| gram-positive | yes | 93.278 | no |
| anaerobic | no | 98.938 | no |
| aerobic | yes | 89.099 | no |
| halophile | no | 69.989 | no |
| spore-forming | yes | 85.672 | no |
| thermophile | no | 98.242 | no |
| glucose-util | yes | 91.953 | no |
| glucose-ferment | no | 88.211 | no |
External links
@ref: 22098
culture collection no.: DSM 25145, CCTCC AB 2011121, NCIM 5462
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25242536 | Domibacillus enclensis sp. nov., isolated from marine sediment, and emended description of the genus Domibacillus. | Sonalkar VV, Mawlankar R, Krishnamurthi S, Tang SK, Dastager SG | Int J Syst Evol Microbiol | 10.1099/ijs.0.068924-0 | 2014 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Pigments, Biological/chemistry, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 27073919 | Domibacillus antri sp. nov., isolated from the soil of a cave. | Xu D, Wang L, Wang G, Zheng S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001080 | 2016 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22098 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25145 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25145) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |