Strain identifier

BacDive ID: 130206

Type strain: Yes

Species: Jeotgalibacillus terrae

Strain history: <- Y-G Chen, Yunnan Inst., China

NCBI tax ID(s): 587735 (species)

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General

@ref: 21991

BacDive-ID: 130206

DSM-Number: 22174

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, motile

description: Jeotgalibacillus terrae DSM 22174 is an aerobe, spore-forming, motile bacterium that was isolated from From non-saline forest soil.

NCBI tax id

  • NCBI tax id: 587735
  • Matching level: species

strain history

@refhistory
21991<- S.-K. Tang and Y.-G. Chen, YIM; JSM 081008 <- Y.-G. Chen and Q.-H. Chen
67771<- Y-G Chen, Yunnan Inst., China

doi: 10.13145/bacdive130206.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Jeotgalibacillus
  • species: Jeotgalibacillus terrae
  • full scientific name: Jeotgalibacillus terrae Srinivas et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Jeotgalibacillus soli

@ref: 21991

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Jeotgalibacillus

species: Jeotgalibacillus terrae

full scientific name: Jeotgalibacillus terrae Srinivas et al. 2016

type strain: yes

Morphology

cell morphology

@refmotilitycell shapeflagellum arrangementgram stainconfidence
25079yes
67771yesrod-shapedperitrichous
67771positive
69480yes96.343
69480positive100

Culture and growth conditions

culture medium

  • @ref: 21991
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
25079positivegrowth10.0-45.0
25079positiveoptimum30.0-35.0mesophilic
21991positivegrowth30mesophilic
67771positivegrowth30-35mesophilic

culture pH

@refabilitytypepHPH range
25079positivegrowth6.0-10.5alkaliphile
25079positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25079aerobe
67771aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
25079roundsporeyes
67771endosporeyes
69481yes98
69480yes99.999

halophily

@refsaltgrowthtested relationconcentration
25079NaClpositivemaximum20 %(w/v)
25079NaCloptimum2.0-5.0 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2507917057cellobiose-carbon source
2507915963ribitol-carbon source
2507915824D-fructose-carbon source
2507912936D-galactose-carbon source
250795291gelatin-hydrolysis
2507917306maltose-carbon source
2507928053melibiose-carbon source
2507917632nitrate-reduction
2507916634raffinose-carbon source
2507917992sucrose-carbon source
2507916199urea-hydrolysis
2507917754glycerol+carbon source
2507928017starch+hydrolysis
2507927082trehalose+carbon source

metabolite production

@refChebi-IDmetaboliteproduction
2507951963hopanoidno
2507916136hydrogen sulfideyes

enzymes

@refvalueactivityec
25079catalase+1.11.1.6
25079cytochrome oxidase+1.9.3.1
25079urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67771From non-saline forest soilHunan ProvinceChinaCHNAsia
21991Forest soilHunan ProvinceChinaCHNAsia
25079non-saline soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_2833.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1504;97_1795;98_2194;99_2833&stattab=map
  • Last taxonomy: Jeotgalibacillus
  • 16S sequence: FJ527421
  • Sequence Identity:
  • Total samples: 1326
  • soil counts: 48
  • aquatic counts: 234
  • animal counts: 1026
  • plant counts: 18

Safety information

risk assessment

  • @ref: 21991
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21991
  • description: 'Jeotgalibacillus soli' Chen et al. 2010 strain JSM 081008 16S ribosomal RNA gene, partial sequence
  • accession: FJ527421
  • length: 1470
  • database: ena
  • NCBI tax ID: 587735

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jeotgalibacillus terrae DSM 22174GCA_016908195contigncbi587735
66792Jeotgalibacillus terrae strain DSM 22174587735.6wgspatric587735
66792Jeotgalibacillus terrae DSM 221742901080661draftimg587735

GC content

@refGC-contentmethod
2199142.6
6777142.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes98no
gram-positiveyes87.601yes
anaerobicno98.353yes
halophileyes74.825no
spore-formingyes94.009yes
glucose-utilyes90.291no
thermophileno98.65no
flagellatedyes89.412no
aerobicyes94.051yes
motileyes91.053yes
glucose-fermentno90.151no

External links

@ref: 21991

culture collection no.: DSM 22174, KCTC 13528, JSM 081008

straininfo link

  • @ref: 88752
  • straininfo: 397073

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20490920Jeotgalibacillus soli sp. nov., isolated from non-saline forest soil, and emended description of the genus Jeotgalibacillus.Chen YG, Peng DJ, Chen QH, Zhang YQ, Tang SK, Zhang DC, Peng QZ, Li WJAntonie Van Leeuwenhoek10.1007/s10482-010-9455-z2010Aerobiosis, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis, Geologic Sediments/microbiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Planococcaceae/classification/*genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, *Soil Microbiology, Temperature, Trees/*microbiologyGenetics
Phylogeny27667642Description of Jeotgalibacillus alkaliphilus sp. nov., isolated from a solar salt pan, and Jeotgalibacillus terrae sp. nov., a name to replace 'Jeotgalibacillus soli' Chen et al. 2010.Srinivas A, Divyasree B, Sasikala C, Tushar L, Bharti D, Ramana CVInt J Syst Evol Microbiol10.1099/ijsem.0.0014912016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Sodium Chloride, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21991Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-22174Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22174)
25079A. D. Srinivas, B.,Sasikala, C.,Tushar, L.,Bharti, D.,Ramana, C. V.Description of Jeotgalibacillus alkaliphilus sp. nov., isolated from a solar salt pan, and Jeotgalibacillus terrae sp. nov., a name to replace 'Jeotgalibacillus soli' Chen et al. 201010.1099/ijsem.0.001491IJSEM 66: 5167-5172 201627667642
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397073.1