Strain identifier
BacDive ID: 130197
Type strain: 
Species: Priestia filamentosa
Strain Designation: SGD-14
Strain history: <- S. G. Dastager, NCIM; SGD-14
NCBI tax ID(s): 1402861 (species)
version 8.1 (current version)
General
@ref: 21528
BacDive-ID: 130197
DSM-Number: 27955
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-negative
description: Priestia filamentosa SGD-14 is a spore-forming, Gram-negative bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1402861
- Matching level: species
strain history
- @ref: 21528
- history: <- S. G. Dastager, NCIM; SGD-14
doi: 10.13145/bacdive130197.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Priestia
- species: Priestia filamentosa
- full scientific name: Priestia filamentosa (Sonalkar et al. 2015) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus filamentosus
@ref: 21528
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus filamentosus
full scientific name: Bacillus filamentosus Sonalkar et al. 2015
strain designation: SGD-14
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96.036
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | no | 99.98 |
Isolation, sampling and environmental information
isolation
- @ref: 21528
- sample type: marine sediment
- geographic location: Goa Province, Chorao Island (15°32'34''N 73°55'15'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 15.5428
- longitude: 73.9208
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_189.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_135;97_146;98_163;99_189&stattab=map
- Last taxonomy: Priestia endophytica
- 16S sequence: KF265351
- Sequence Identity:
- Total samples: 14129
- soil counts: 5640
- aquatic counts: 2200
- animal counts: 4743
- plant counts: 1546
Sequence information
16S sequences
- @ref: 21528
- description: Bacillus filamentosus strain SGD-14 16S ribosomal RNA gene, partial sequence
- accession: KF265351
- length: 1402
- database: ena
- NCBI tax ID: 1402861
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Priestia filamentosa DSM 27955 | GCA_002237735 | scaffold | ncbi | 1402861 |
| 66792 | Priestia filamentosa SGD-14 | GCA_900177535 | scaffold | ncbi | 1402861 |
| 66792 | Bacillus filamentosus strain DSM 27955 | 1402861.6 | wgs | patric | 1402861 |
| 66792 | Bacillus filamentosus strain DSM 27955 | 1402861.7 | wgs | patric | 1402861 |
GC content
- @ref: 21528
- GC-content: 39.6
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | yes | 74.535 | no |
| gram-positive | yes | 92.053 | no |
| anaerobic | no | 98.843 | no |
| aerobic | yes | 89.761 | no |
| halophile | yes | 59.449 | no |
| spore-forming | yes | 92.262 | no |
| thermophile | no | 95.574 | no |
| glucose-util | yes | 91.367 | no |
| motile | yes | 88.326 | no |
| glucose-ferment | no | 85.138 | no |
External links
@ref: 21528
culture collection no.: DSM 27955, NCIM 5491
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21528 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27955 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27955) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |