Strain identifier

BacDive ID: 13019

Type strain: Yes

Species: Pseudomonas boreopolis

Strain Designation: 8-H

Strain history: CIP <- 2000, NCIMB <- NRRL

NCBI tax ID(s): 86183 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8212

BacDive-ID: 13019

DSM-Number: 19620

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Pseudomonas boreopolis 8-H is an aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 86183
  • Matching level: species

strain history

@refhistory
8212<- NCIMB <- NRRL
67770CIP 106717 <-- NCIMB 9401 <-- NRRL B-550.
116843CIP <- 2000, NCIMB <- NRRL

doi: 10.13145/bacdive13019.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas boreopolis
  • full scientific name: Pseudomonas boreopolis Gray and Thornton 1928 (Approved Lists 1980)

@ref: 8212

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas boreopolis

full scientific name: Pseudomonas boreopolis Gray and Thornton 1928

strain designation: 8-H

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.582
6948099.994negative
116843nonegativerod-shaped

pigmentation

  • @ref: 116843
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8212NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35984MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116843CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8212positivegrowth28mesophilic
35984positivegrowth30mesophilic
44654positivegrowth30mesophilic
67770positivegrowth30mesophilic
116843positivegrowth25-41
116843nogrowth5psychrophilic
116843nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44654aerobe
116843obligate aerobe

spore formation

@refspore formationconfidence
69481no95
69480no99.982

halophily

@refsaltgrowthtested relationconcentration
116843NaClpositivegrowth0-4 %
116843NaClnogrowth6 %
116843NaClnogrowth8 %
116843NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11684316947citrate+carbon source
1168434853esculin+hydrolysis
11684317632nitrate+reduction
11684316301nitrite-reduction
11684317632nitrate-respiration

antibiotic resistance

  • @ref: 116843
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116843
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116843oxidase+
116843beta-galactosidase+3.2.1.23
116843alcohol dehydrogenase-1.1.1.1
116843gelatinase+
116843amylase+
116843DNase-
116843caseinase-3.4.21.50
116843catalase+1.11.1.6
116843tween esterase-
116843lecithinase-
116843lipase-
116843lysine decarboxylase-4.1.1.18
116843ornithine decarboxylase-4.1.1.17
116843protease+
116843tryptophan deaminase-
116843urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116843-+++-++-+-++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116843+++++-++-++++++++++-+-+-+---------++---+-+-++-+--+-+-+-----+---------------+--+++-+--------++++++-+

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
82121Risk group (German classification)
1168431Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8212
  • description: [Pseudomonas] boreopolis gene for 16S rRNA, strain: ATCC 33662
  • accession: AB021391
  • length: 1502
  • database: ena
  • NCBI tax ID: 86183

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Pseudomonas] boreopolis JCM 13306GCA_014654535contigncbi86183
66792[Pseudomonas] boreopolis strain JCM 1330686183.4wgspatric86183

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno95no
motileyes87.843no
flagellatedno80.553no
gram-positiveno98.519no
anaerobicno98.03no
halophileno97.575no
spore-formingno96.019no
glucose-utilyes94.781no
aerobicyes92.318yes
thermophileno98.914yes
glucose-fermentno89.242no

External links

@ref: 8212

culture collection no.: DSM 19620, ATCC 33662, CIP 106717, NCIMB 9401, NRRL B-550, CCUG 3365, JCM 13306, BCRC 15823, LMG 979

straininfo link

  • @ref: 82230
  • straininfo: 14356

Reference

@idauthorscataloguedoi/urltitle
8212Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19620)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19620
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35984Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18879
44654Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3365)https://www.ccug.se/strain?id=3365
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82230Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14356.1StrainInfo: A central database for resolving microbial strain identifiers
116843Curators of the CIPCollection of Institut Pasteur (CIP 106717)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106717