Strain identifier
BacDive ID: 13019
Type strain:
Species: Pseudomonas boreopolis
Strain Designation: 8-H
Strain history: CIP <- 2000, NCIMB <- NRRL
NCBI tax ID(s): 86183 (species)
General
@ref: 8212
BacDive-ID: 13019
DSM-Number: 19620
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Pseudomonas boreopolis 8-H is an aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 86183
- Matching level: species
strain history
@ref | history |
---|---|
8212 | <- NCIMB <- NRRL |
67770 | CIP 106717 <-- NCIMB 9401 <-- NRRL B-550. |
116843 | CIP <- 2000, NCIMB <- NRRL |
doi: 10.13145/bacdive13019.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas boreopolis
- full scientific name: Pseudomonas boreopolis Gray and Thornton 1928 (Approved Lists 1980)
@ref: 8212
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas boreopolis
full scientific name: Pseudomonas boreopolis Gray and Thornton 1928
strain designation: 8-H
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 96.582 | ||
69480 | 99.994 | negative | ||
116843 | no | negative | rod-shaped |
pigmentation
- @ref: 116843
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8212 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
35984 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
116843 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8212 | positive | growth | 28 | mesophilic |
35984 | positive | growth | 30 | mesophilic |
44654 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
116843 | positive | growth | 25-41 | |
116843 | no | growth | 5 | psychrophilic |
116843 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44654 | aerobe |
116843 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 95 |
69480 | no | 99.982 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116843 | NaCl | positive | growth | 0-4 % |
116843 | NaCl | no | growth | 6 % |
116843 | NaCl | no | growth | 8 % |
116843 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116843 | 16947 | citrate | + | carbon source |
116843 | 4853 | esculin | + | hydrolysis |
116843 | 17632 | nitrate | + | reduction |
116843 | 16301 | nitrite | - | reduction |
116843 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 116843
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 116843
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
116843 | oxidase | + | |
116843 | beta-galactosidase | + | 3.2.1.23 |
116843 | alcohol dehydrogenase | - | 1.1.1.1 |
116843 | gelatinase | + | |
116843 | amylase | + | |
116843 | DNase | - | |
116843 | caseinase | - | 3.4.21.50 |
116843 | catalase | + | 1.11.1.6 |
116843 | tween esterase | - | |
116843 | lecithinase | - | |
116843 | lipase | - | |
116843 | lysine decarboxylase | - | 4.1.1.18 |
116843 | ornithine decarboxylase | - | 4.1.1.17 |
116843 | protease | + | |
116843 | tryptophan deaminase | - | |
116843 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116843 | - | + | + | + | - | + | + | - | + | - | + | + | - | + | - | + | + | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116843 | + | + | + | + | + | - | + | + | - | + | + | + | + | + | + | + | + | + | + | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | + | - | + | - | + | + | - | + | - | - | + | - | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | + | + | - | + | - | - | - | - | - | - | - | - | + | + | + | + | + | + | - | + |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8212 | 1 | Risk group (German classification) |
116843 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 8212
- description: [Pseudomonas] boreopolis gene for 16S rRNA, strain: ATCC 33662
- accession: AB021391
- length: 1502
- database: ena
- NCBI tax ID: 86183
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | [Pseudomonas] boreopolis JCM 13306 | GCA_014654535 | contig | ncbi | 86183 |
66792 | [Pseudomonas] boreopolis strain JCM 13306 | 86183.4 | wgs | patric | 86183 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 95 | no |
motile | yes | 87.843 | no |
flagellated | no | 80.553 | no |
gram-positive | no | 98.519 | no |
anaerobic | no | 98.03 | no |
halophile | no | 97.575 | no |
spore-forming | no | 96.019 | no |
glucose-util | yes | 94.781 | no |
aerobic | yes | 92.318 | yes |
thermophile | no | 98.914 | yes |
glucose-ferment | no | 89.242 | no |
External links
@ref: 8212
culture collection no.: DSM 19620, ATCC 33662, CIP 106717, NCIMB 9401, NRRL B-550, CCUG 3365, JCM 13306, BCRC 15823, LMG 979
straininfo link
- @ref: 82230
- straininfo: 14356
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8212 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19620) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19620 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
35984 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18879 | ||
44654 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 3365) | https://www.ccug.se/strain?id=3365 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
82230 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14356.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116843 | Curators of the CIP | Collection of Institut Pasteur (CIP 106717) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106717 |