Strain identifier
BacDive ID: 130179
Type strain:
Species: Bacillus sp.
Strain Designation: 1NLA3E
Strain history: <- S. Green, Oceanography Dept., Florida State Univ., Tallahassee, USA; 1NLA3E <- O. Prakash
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 21507
BacDive-ID: 130179
DSM-Number: 24511
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bacillus sp. 1NLA3E is a mesophilic bacterium that was isolated from contaminated subsurface sediment.
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 21507
- history: <- S. Green, Oceanography Dept., Florida State Univ., Tallahassee, USA; 1NLA3E <- O. Prakash
doi: 10.13145/bacdive130179.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 21507
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: 1NLA3E
type strain: no
Morphology
colony morphology
- @ref: 21507
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21507
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 21507
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21507
- sample type: contaminated subsurface sediment
- geographic location: TN, Oak Ridge
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | |
#Environmental | #Terrestrial | #Geologic |
#Environmental | #Terrestrial | #Sediment |
Sequence information
16S sequences
- @ref: 21507
- description: Bacillus sp. 1NLA3E 16S ribosomal RNA gene, partial sequence
- accession: FJ851432
- length: 1388
- database: ena
- NCBI tax ID: 666686
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus sp. 1NLA3E | GCA_000242895 | complete | ncbi | 666686 |
66792 | Bacillus sp. 1NLA3E | 666686.3 | wgs | patric | 666686 |
66792 | Bacillus sp. 1NLA3E | 2506520047 | complete | img | 666686 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 81.89 | no |
flagellated | yes | 84.021 | no |
gram-positive | yes | 80.697 | no |
anaerobic | no | 94.422 | no |
aerobic | no | 55.897 | no |
halophile | no | 92.786 | no |
spore-forming | yes | 95.399 | no |
thermophile | no | 94.331 | no |
glucose-util | yes | 86.777 | no |
glucose-ferment | no | 91.716 | no |
External links
@ref: 21507
culture collection no.: DSM 24511
straininfo link
- @ref: 88730
- straininfo: 400543
literature
- topic: Genetics
- Pubmed-ID: 23833140
- title: Genome sequences for three denitrifying bacterial strains isolated from a uranium- and nitrate-contaminated subsurface environment.
- authors: Venkatramanan R, Prakash O, Woyke T, Chain P, Goodwin LA, Watson D, Brooks S, Kostka JE, Green SJ
- journal: Genome Announc
- DOI: 10.1128/genomeA.00449-13
- year: 2013
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21507 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24511 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24511) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
88730 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400543.1 |