Strain identifier

BacDive ID: 130179

Type strain: No

Species: Bacillus sp.

Strain Designation: 1NLA3E

Strain history: <- S. Green, Oceanography Dept., Florida State Univ., Tallahassee, USA; 1NLA3E <- O. Prakash

NCBI tax ID(s): 1409 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21507

BacDive-ID: 130179

DSM-Number: 24511

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Bacillus sp. 1NLA3E is a mesophilic bacterium that was isolated from contaminated subsurface sediment.

NCBI tax id

  • NCBI tax id: 1409
  • Matching level: species

strain history

  • @ref: 21507
  • history: <- S. Green, Oceanography Dept., Florida State Univ., Tallahassee, USA; 1NLA3E <- O. Prakash

doi: 10.13145/bacdive130179.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus sp.
  • full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Quasibacillus
    20215Pseudobacillus
    20215Maribacillus

@ref: 21507

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus sp.

full scientific name: Bacillus sp.

strain designation: 1NLA3E

type strain: no

Morphology

colony morphology

  • @ref: 21507
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 21507
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 21507
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 21507
  • sample type: contaminated subsurface sediment
  • geographic location: TN, Oak Ridge
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Geologic
#Environmental#Terrestrial#Sediment

Sequence information

16S sequences

  • @ref: 21507
  • description: Bacillus sp. 1NLA3E 16S ribosomal RNA gene, partial sequence
  • accession: FJ851432
  • length: 1388
  • database: ena
  • NCBI tax ID: 666686

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus sp. 1NLA3EGCA_000242895completencbi666686
66792Bacillus sp. 1NLA3E666686.3wgspatric666686
66792Bacillus sp. 1NLA3E2506520047completeimg666686

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes81.89no
flagellatedyes84.021no
gram-positiveyes80.697no
anaerobicno94.422no
aerobicno55.897no
halophileno92.786no
spore-formingyes95.399no
thermophileno94.331no
glucose-utilyes86.777no
glucose-fermentno91.716no

External links

@ref: 21507

culture collection no.: DSM 24511

straininfo link

  • @ref: 88730
  • straininfo: 400543

literature

  • topic: Genetics
  • Pubmed-ID: 23833140
  • title: Genome sequences for three denitrifying bacterial strains isolated from a uranium- and nitrate-contaminated subsurface environment.
  • authors: Venkatramanan R, Prakash O, Woyke T, Chain P, Goodwin LA, Watson D, Brooks S, Kostka JE, Green SJ
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00449-13
  • year: 2013
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21507Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24511Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24511)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
88730Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400543.1