Strain identifier

BacDive ID: 13017

Type strain: Yes

Species: Pseudomonas lundensis

Strain Designation: 573, 138

Strain history: CIP <- 1989, CCM <- A. Ternstrîm, Swedish Meat Res. Inst., Sweden : strain 160, Pseudomonas bovis

NCBI tax ID(s): 86185 (species)

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General

@ref: 2558

BacDive-ID: 13017

DSM-Number: 6252

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas lundensis 573 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from prepacked beef.

NCBI tax id

  • NCBI tax id: 86185
  • Matching level: species

strain history

@refhistory
2558<- CCM <- J. Ursing
120675CIP <- 1989, CCM <- A. Ternstrîm, Swedish Meat Res. Inst., Sweden : strain 160, Pseudomonas bovis

doi: 10.13145/bacdive13017.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas lundensis
  • full scientific name: Pseudomonas lundensis Molin et al. 1986

@ref: 2558

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas lundensis

full scientific name: Pseudomonas lundensis Molin et al. 1986

strain designation: 573, 138

type strain: yes

Morphology

cell morphology

  • @ref: 120675
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 120675
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2558NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40529MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120675CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2558positivegrowth25mesophilic
40529positivegrowth25mesophilic
120675positivegrowth5-37
120675nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120675
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120675NaClpositivegrowth0-6 %
120675NaClnogrowth8 %
120675NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12067516947citrate+carbon source
1206754853esculin-hydrolysis
12067517632nitrate-reduction
12067516301nitrite-reduction
12067515882phenol-degradation
12067517632nitrate-respiration

antibiotic resistance

  • @ref: 120675
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120675
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120675oxidase+
120675beta-galactosidase-3.2.1.23
120675alcohol dehydrogenase+1.1.1.1
120675gelatinase-
120675amylase-
120675DNase-
120675caseinase-3.4.21.50
120675catalase+1.11.1.6
120675tween esterase-
120675lecithinase-
120675lipase-
120675lysine decarboxylase-4.1.1.18
120675ornithine decarboxylase-4.1.1.17
120675protease-
120675tryptophan deaminase-
120675urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120675-+++-++-+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120675++-++---------------+---+------++---------------++++-+--+---+------+----++-++++++++++---++++++--+++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2558prepacked beefSwedenSWEEurope
120675Food, Prepacked beef

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Bottled, canned, packed food
#Engineered#Food production#Meat

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
25581Risk group (German classification)
1206751Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas lundensis gene for 16S rRNA, strain: ATCC 49968AB0213951511ena86185
20218Pseudomonas lundensis 16S ribosomal RNA gene, partial sequenceAF299363434ena86185

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas lundensis DSM 6252GCA_001042985contigncbi86185
66792Pseudomonas lundensis strain DSM 625286185.4wgspatric86185
66792Pseudomonas lundensis DSM 62522663763376draftimg86185

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.8no
flagellatedyes83.407no
gram-positiveno98.48no
anaerobicno98.191no
halophileno90.719no
spore-formingno95.059no
glucose-utilyes88.402no
aerobicyes92.334no
thermophileno99.702yes
glucose-fermentno87.718no

External links

@ref: 2558

culture collection no.: DSM 6252, ATCC 49968, CCM 3503, CIP 103272, CCUG 18757

straininfo link

  • @ref: 82228
  • straininfo: 7808

literature

  • topic: Metabolism
  • Pubmed-ID: 19370069
  • title: Regulation of pyrimidine formation in Pseudomonas lundensis.
  • authors: West TP
  • journal: Can J Microbiol
  • DOI: 10.1139/w08-137
  • year: 2009
  • mesh: Aspartate Carbamoyltransferase/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Culture Media, Enzyme Induction, *Gene Expression Regulation, Bacterial, Glucose/metabolism, Orotic Acid/metabolism, Pseudomonas/enzymology/genetics/growth & development/*metabolism, Pyrimidines/*biosynthesis, Succinates/metabolism
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2558Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6252)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6252
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40529Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15051
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
82228Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7808.1StrainInfo: A central database for resolving microbial strain identifiers
120675Curators of the CIPCollection of Institut Pasteur (CIP 103272)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103272