Strain identifier
BacDive ID: 130160
Type strain:
Species: Anoxybacillus sp.
Strain Designation: JS1
Strain history: S. K. Das JS1.
NCBI tax ID(s): 1872573 (species)
version 8.1 (current version)
General
@ref: 21476
BacDive-ID: 130160
DSM-Number: 27374
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile
description: Anoxybacillus sp. JS1 is a spore-forming, thermophilic, motile bacterium that was isolated from hotspring.
NCBI tax id
- NCBI tax id: 1872573
- Matching level: species
strain history
@ref | history |
---|---|
21476 | <- S. K. Das, Inst. Life Sci., Bhubaneswar, India; JS1 |
67770 | S. K. Das JS1. |
doi: 10.13145/bacdive130160.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Anoxybacillus
- species: Anoxybacillus sp.
- full scientific name: Anoxybacillus Pikuta et al. 2000
@ref: 21476
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Anoxybacillus
species: Anoxybacillus sp.
full scientific name: Anoxybacillus sp.
strain designation: JS1
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 97.442 | |
69480 | 100 | positive |
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
67770 | positive | growth | 50 | thermophilic | |
69480 | thermophilic | 99.649 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21476 | hotspring | Jharkand, Surajkund | India | IND | Asia |
67770 | Hot spring at Suryakund | Jharkhand | India | IND | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Thermal spring
taxonmaps
- @ref: 69479
- File name: preview.99_4145.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_4145&stattab=map
- Last taxonomy: Anoxybacillus
- 16S sequence: KC958552
- Sequence Identity:
- Total samples: 1640
- soil counts: 74
- aquatic counts: 273
- animal counts: 1269
- plant counts: 24
Sequence information
16S sequences
- @ref: 21476
- description: Anoxybacillus suryakundensis strain JS1 16S ribosomal RNA gene, partial sequence
- accession: KC958552
- length: 1435
- database: ena
- NCBI tax ID: 1325335
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Anoxybacillus suryakundensis strain DSM 27374 | 1325335.3 | wgs | patric | 1325335 |
66792 | Anoxybacillus suryakundensis DSM 27374 | 2615840616 | draft | img | 1325335 |
67770 | Anoxybacillus suryakundensis DSM 27374 | GCA_001517225 | scaffold | ncbi | 1325335 |
67770 | Anoxybacillus suryakundensis DSM 27374 | GCA_001418025 | scaffold | ncbi | 1325335 |
GC content
@ref | GC-content | method |
---|---|---|
21476 | 42.1 | |
67770 | 42.1 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 89.575 | no |
gram-positive | yes | 85.462 | no |
anaerobic | no | 93.448 | no |
halophile | no | 89.342 | no |
spore-forming | yes | 95.572 | no |
glucose-util | yes | 90.423 | no |
aerobic | yes | 51.971 | no |
flagellated | yes | 71.357 | no |
thermophile | yes | 99.592 | yes |
glucose-ferment | no | 86.712 | no |
External links
@ref: 21476
culture collection no.: DSM 27374, JCM 19211, LMG 27616
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21476 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27374 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27374) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |